Granted Patent B2

US 7,516,018 · App. 10/206,387 · Granted Apr 7, 2009

Abstract

Claims (22)

1. A computer assisted method for determining the molecular structural units found in small molecules, for which a measured activity in the same assay has previously been determined for each molecule, that are responsible for the observed activities of the molecules comprising the following steps all of which are performed on a computer:

a) fragmenting the molecules into structural units;

b) determining all combinations of the structural units which may be formed from the individual units;

c) associating the activities of the molecules from which the combinations are derived with each structural unit and each combination;

d) selecting a single structural unit or combination of structural units for analysis:

e) creating two lists, a first list containing the activities of compounds containing the selected structural unit, and a second list containing the activities of compounds that do not have the selected structural unit;

f) performing a statistical analysis on the activity distributions of the two lists to determine whether the association of the structural unit or combination of structural units is relevant to the measured activity;

g) assigning every molecule to all the structural units found in the molecule which were determined to be relevant in step f); and

h) outputting the structural units relevant to the measured activities in association with the activities and the molecules containing the structural units, wherein the associated molecules form clusters associating different structural features with observed activity.

2. The method of claim 1 , step (a) in which the molecules are fragmented into rigid and flexible units.

3. A computer assisted method for determining the molecular structural units found in small molecules, for which a measured activity in the same assay has previously been determined for each molecule, that are responsible for the observed activities of the molecules comprising the following steps all of which are performed on a computer:

a) fragmenting the molecules into structural units;

b) determining all combinations of the structural units which may be formed from the individual units;

c) associating the activities of the molecules from which the combinations are derived with each structural unit and each combination;

d) selecting a single structural unit or combination of structural units for analysis:

e) creating two lists, a first list containing the activities of compounds containing the selected structural unit, and a second list containing the activities of compounds that do not have the selected structural unit;

f) performing a statistical analysis on the activity distributions of the two lists to determine whether the association of the structural unit or combination of structural units is relevant to the measured activity; and

g) storing the results of the testing for each unit or combination of structural units;

h) repeating steps d) through g) until all structural units and combinations of structural units have been tested;

i) assigning every molecule to all the structural units found in the molecule which were determined to be relevant in step f); and

j) outputting the structural units relevant to the measured activities in association with the activities and the molecules containing the structural units, wherein the associated molecules form clusters associating different structural features with observed activity.

4. The method of claim 3 , step (a) in which the molecules are fragmented into rigid and flexible units.

Assignments (11)