IP Library Granted Patent US 6,873,914
Granted Patent B2
US 6,873,914 · App. 10/300,360 · Granted Mar 29, 2005

Methods and systems for analyzing complex biological systems

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Quick Facts
Patent No.
US 6,873,914
App. No.
10/300,360
Granted
Mar 29, 2005
Kind
B2
Abstract

The present invention provides methods and systems for organizing complex and disparate data. More specifically, the present invention provides methods and systems for organizing complex and disparate data into coherent data sets. Coherent data sets resulting from the methods and systems of the present invention serve as models for biological systems. Methods and systems for integrating data and creating coherent data sets are useful for numerous biological applications, such as, for example, determining gene function, identifying and validating drug and pesticide targets, identifying and validating drug and pesticide candidate compounds, profiling drug and pesticide compounds, producing a compilation of health or wellness profiles, determining compound site(s) of action, identifying unknown samples, and numerous other applications in the agricultural, pharmaceutical, forensic, and biotechnology industries.

Claims (12)

1. A system for examining metabolites in a biological sample, comprising:

a) means for entering a unique identifier of at least one biological sample into a computer tracking system;

b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least LC-MS, GC-MS, and NMR;

c) means for storing in said computer tracking system said chemical component data, wherein said data are linked to said unique identifier;

d) means for characterizing and/or identifying said chemical components; and

e) means for linking said characerized and/or identified chemical components to metabolites in biochemical pathways.

2. A system for examining metabolites in a biological sample, comprising:

a) means for entering a unique identifier of at least one biological sample into a computer tracking system;

b) means for simultaneously collecting data from said sample, for a plurality of peaks, each peak comprising at least one chemical component, wherein said data comprise data from at least LC-MS, GC-MS, and ICP-MS;

c) means for storing in said computer tracking system said chemical component data, wherein said data are linked to said unique identifier;

d) means for characterizing and/or identifying said chemical components; and

e) means for linking said characerized and/or identified chemical components to metabolites in biochemical pathways.

Assignments (14)
CORRECTIVE ASSIGNMENT TO CORRECT THE ASSIGNOR'S NAME FROM " PERCEPTIVE CREDIT HOLDINGS ILL, LP" TO "PERCEPTIVE CREDIT HOLDINGS III, LP" PREVIOUSLY RECORDED AT REEL: 66971 FRAME: 0054. ASSIGNOR(S) HEREBY CONFIRMS THE RELEASE OF SECURITY INTEREST. Recorded Apr 4, 2024
From: PERCEPTIVE CREDIT HOLDINGS III, LP
To: METABOLON, INC.
Reel/Frame 067019/0662 →
RELEASE OF SECURITY INTEREST Recorded Apr 1, 2024
From: PERCEPTIVE CREDIT HOLDINGS ILL, LP
To: METABOLON, INC.
Reel/Frame 066971/0054 →
SECURITY AGREEMENT Recorded Jul 24, 2020
From: METABOLON, INC.
To: PERCEPTIVE CREDIT HOLDINGS III, LP
Reel/Frame 053313/0406 →
RELEASE OF SECURITY INTEREST Recorded Jul 23, 2020
From: INNOVATUS LIFE SCIENCES LENDING FUND I, LP
To: METABOLON, INC.
Reel/Frame 053290/0441 →
SECURITY INTEREST Recorded Jun 10, 2020
From: METABOLON, INC.
To: INNOVATUS LIFE SCIENCES LENDING FUND I, LP
Reel/Frame 052902/0736 →
RELEASE OF SECURITY INTEREST Recorded Jul 10, 2018
From: MIDCAP FUNDING IV TRUST
To: METABOLON, INC.; LACM, INC.
Reel/Frame 047247/0568 →
RELEASE OF SECURITY INTEREST Recorded Jul 10, 2018
From: MIDCAP FUNDING IV TRUST
To: METABOLON, INC.; LACM, INC.
Reel/Frame 047247/0658 →
SECURITY INTEREST (TERM LOAN) Recorded Jun 15, 2016
From: METABOLON, INC.; LACM, INC.
To: MIDCAP FINANCIAL TRUST, AS AGENT
Reel/Frame 039024/0396 →
SECURITY INTEREST (REVOLVING LOAN) Recorded Jun 15, 2016
From: METABOLON, INC.; LACM, INC.
To: MIDCAP FINANCIAL TRUST, AS AGENT
Reel/Frame 039024/0422 →
CHANGE OF NAME Recorded Nov 12, 2007
From: ICORIA, INC.
To: COGENICS ICORIA, INC.
Reel/Frame 020092/0731 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 12, 2007
From: COGENICS ICORIA, INC.
To: METABOLON, INC.
Reel/Frame 020092/0749 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 17, 2004
From: PARADIGM GENETICS, INC.
To: ICORIA, INC.
Reel/Frame 015065/0876 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 1, 2003
From: BEECHER, CHRISTOPHER
To: PARADIGM GENETICS, INC.
Reel/Frame 014020/0743 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 15, 2003
From: RANASINGHE, YASMIN; WINFIELD, STEPHANIE; NYE, GORDON; POPA-BURKE, IOANA; BROADWELL, DAVID; GLASSBROOK, NORMAN
To: PARADIGM GENETICS, INC.
Reel/Frame 013805/0520 →