User-configurable generic experiment class for combinatorial materials research
View Patent ↗Methods and apparatus, including computer program products implement techniques for processing experimental data according. An input specifies a set of variable definitions according to a variable definition template for defining a set of variables of a plurality of variable types usable in experiments of a pre-defined experiment class. Data from an experiment of an experiment type is received. A first representation of the data is stored in a format defined according to the plurality of variable types. A second representation of the data, derived from the first representation, is presented in a format defined according to the set of variable definitions. The variable definition template is referenced in the pre-defined experiment class. The data includes a plurality of values corresponding to variables defined in the set of variable definitions.
1. A computer-implemented method for processing experimental data according to an object model, the method comprising:
providing an object model for representing experiments performed in a laboratory data management system, the object model including a first pre-defined experiment class that can be instantiated to define one or more experiment objects that represent data for particular experiments performed in the laboratory data management system, the first pre-defined experiment class having an associated variable definition template defining a plurality of variable types that can be used to represent data from experiments performed in the laboratory data management system, the first pre-defined experiment class being configurable to represent a plurality of different types of experiments performed by the laboratory data management system based on different sets of variable definitions;
receiving input specifying a first set of one or more variable definitions defining a set of variables for a first experiment type to be represented by one or more instances of the first pre-defined experiment class, the variables in the set of variables having types selected from the plurality of variable types defined in the variable definition template;
receiving data from an experiment of the first experiment type, the data including a plurality of values corresponding to variables defined in the first set of variable definitions;
storing a first representation of the data from the experiment of the first experiment type in a format defined according to the plurality of variable types; and
presenting a second representation of the data from the experiment of the first experiment type, the second representation being derived from the first representation and being presented in a format defined according to the first set of variable definitions.
2. The method of claim 1 , wherein:
input specifying a first set of one or more variable definitions includes input defining an experiment name and, for each variable in the set of variable definitions, input defining a variable name and a datatype.
3. The method of claim 1 , wherein:
the first representation includes an entry for each of the plurality of values; and
the second representation includes an entry representing values for two or more variables defined in the first set of variables.
4. The method of claim 3 , wherein:
each entry is a row in a table.
5. The method of claim 3 , wherein:
the data from the experiment of the first experiment type includes values for a plurality of members of a library of materials; and
the second representation includes an entry representing values for two or more variables for a member of the library.
6. The method of claim 1 , wherein:
the first representation is a sparse table.
7. The method of claim 6 , wherein;
the second representation is a dense table.
8. The method of claim 7 , wherein:
the second representation includes columns corresponding to the defined variables.
9. The method of claim 1 , further comprising:
receiving a set of data from a second experiment, the set of data including one or more values corresponding to a set of variables defined in a second pre-defined experiment class of the object model;
storing and presenting a representation of the data from the experiment of the second experiment type in a format defined according to the second pre-defined experiment class of the object model.
10. The method of claim 1 , further comprising:
receiving input specifying a second set of one or more variable definitions defining a set of variables for a second experiment type, the variables in the set of variables for the second experiment type having types selected from the plurality of variable types defined in the variable definition template;
receiving data from an experiment of the second experiment type, the data including a plurality of values corresponding to variables defined in the second set of variable definitions; and
storing a first representation of the data from the experiment of the second experiment type in a formal defined according to the variable definition template; and
presenting a second representation of the data from the experiment of the second experiment type, the second representation being derived from the first representation and being presented in a format defined according to the second set of variable definitions.
11. A computer program product, tangibly stored on a computer-readable medium, for processing experimental data according to an object model, comprising instructions operable to cause a programmable processor to:
provide an object model for representing experiments performed in a laboratory data management system, the object model including a first pre-defined experiment class that can be instantiated to define one or more experiment objects that represent data for particular experiments performed in the laboratory data management system, the first pre-defined experiment class having an associated variable definition template defining a plurality of variable types that can be used to represent data from experiments performed in the laboratory data management system, the first pre-defined experiment class being configurable to represent a plurality of different types of experiments performed by the laboratory data management system based on different sets of variable definitions;
receive input specifying a first set of one or more variable definitions defining a set of variables for a first experiment type to be represented by one or more instances of the first pre-defined experiment class, the variables in the set of variables having types selected from the plurality of variable types defined in the variable definition template;
receive data from an experiment of the first experiment type, the data including a plurality of values corresponding to variables defined in the first set of variable definitions;
store a first representation of the data from the experiment of the first experiment type in a format defined according to the plurality of variable types; and
present a second representation of the data from the experiment of the first experiment type, the second representation being derived from the first representation and being presented in a format defined according to the first set of variable definitions.
12. The computer program product of claim 11 , wherein:
input specifying a first set of one or more variable definitions includes input defining an experiment name and, for each variable in the set of variable definitions, input defining a variable name and a datatype.
13. The computer program product of claim 11 , wherein:
the first representation includes an entry for each of the plurality of values; and
the second representation includes an entry representing values for two or more variables defined in the first set of variables.
14. The computer program product of claim 13 , wherein:
each entry is a row in a table.
15. The computer program product of claim 13 , wherein:
the data from the experiment of the first experiment type includes values for a plurality of members of a library of materials; and
the second representation includes an entry representing values for two or more variables for a member of the library.
16. The computer program product of claim 11 , wherein:
the first representation is a sparse table.
17. The computer program product of claim 16 , wherein;
the second representation is a dense table.
18. The computer program product of claim 17 , wherein:
the second representation includes columns corresponding to the defined variables.
19. The computer program product of claim 11 , further comprising instructions to:
receive a set of data from a second experiment, the set of data including one or more values corresponding to a set of variables defined in a second pre-defined experiment class of the object model;
store and present a representation of the data from the experiment of the second experiment type in a format defined according to the second pre-defined experiment class of the object model.
20. The computer program product of claim 11 , further comprising instructions to:
receive input specifying a second set of one or more variable definitions defining a set of variables for a second experiment type, the variables in the set of variables for the second experiment type having types selected from the plurality of variable types defined in the variable definition template;
receive data from an experiment of the second experiment type, the data including a plurality of values corresponding to variables defined in the second set of variable definitions; and
store a first representation of the data from the experiment of the second experiment type in a format defined according to the variable definition template; and
present a second representation of the data from the experiment of the second experiment type, the second representation being derived from the first representation and being presented in a format defined according to the second set of variable definitions.