Immobilization of oligonucleotides onto solid supports
View Patent ↗A solid support bound polynucleotide, preferably a 3′-O- or 5′-O-substituted polynucleotide, is disclosed. The polynucleotides are of formula: wherein Q is a substantially pure polynucleotide, each X is O or S; Y is an inert spacer group; R represents the solid support. Also disclosed is a method of isolating a target biomolecule, preferably a protein or a polynucleotide, from a mixture.
1. A solid support bound polynucleotide of the formula:
wherein:
Q is a substantially pure polynucleotide;
each X is independently O or S;
Y is an inert spacer group; and
R is a solid support;
the polynucleotide being bound to the solid support, R, via a phosphoramide linkage, or a phosphate ester linkage formed by esterifying a phosphate group with a hydroxy pendent from the solid support.
2. A solid support bound 3′-O- or 5′-O-substituted polynucleotide according to claim 1 wherein the 3′-O- or 5′-O-substituent is represented by the following structural formula:
wherein:
each X is independently O or S;
Y is an inert spacer group; and
R is a solid support; and the 3′-O- and 5′-O-substituted polynucleotide are substantially pure.
3. A solid support bound polynucleotide according to claim 1 or 2 , wherein Y is a straight chained hydrocarbyl group or a polyalkylene glycol group and each X is O.
4. A solid support bound polynucleotide according to claim 3 , wherein Y is a C3–C10 alkylene group.
5. A solid support bound polynucleotide according to claim 1 or 2 , wherein the polynucleotide is a polydeoxynucleotide.
6. A solid support bound polynucleotide according to claim 1 or 2 , wherein the polynucleotide is a polyribonucleotide.
7. A solid support bound polynucleotide according to claim 1 or 2 , wherein the solid support is amino sepharose, amino polystyrene, amino silica beads, silica control pore glass beads, an acrylate base amino support or a methacrylate base amino support.
8. A solid support bound polynucleotide according to claim 7 , wherein the solid support is amino sepharose.
9. A solid support bound polynucleotide according to claim 1 or 2 , wherein the polynucleotide selectively binds a target protein.
10. A method of preparing a solid support bound polynucleotide, said method comprising the step of esterifying or amidating the terminal phosphate of a 2′-O-, 3′-O- or 5′-O-substituted polynucleotide with an amine or hydroxyl group that is pendent from a solid support, wherein the 2′-O-, 3′-O- or the 5′-O-substituent is represented by the following structural formula:
and each X is independently O or S; and Y is a straight chained hydrocarbyl group or a polyalkylene glycol group.
11. The method of claim 10 wherein the terminal phosphate is esterified or amidated in the presence of 1 -(3-dimethylaminopropyl)-3-ethyl-carbodiimide.
12. The method of claim 10 or 11 , wherein the solid support is, amino sepharose, amino polystyrene, amino silica beads, silica control pore glass beads, an acrylate base amino support or a methacrylate base amino support.
13. The method of claim 12 , wherein the solid support is amino sepharose.
14. A method of isolating a target biomolecule from a mixture, said method comprising the steps of:
a) providing a solid support bound polynucleotide according to claim 1 or 2 , wherein the polynucleotide selectively binds the target biomolecule; and
b) contacting the mixture with the solid support bound polynucleotide under conditions suitable for binding the target biomolecule to the polynucleotide.
15. The method of claim 14 , wherein the target molecule is a target protein.
16. The method of claim 15 , further comprising the step of separating the solid support bound polynucleotide from the mixture and eluting the target protein from the polynucleotide.
17. The method of claim 14 , wherein the target molecule is a target polynucleotide which hybridizes to the solid support bound polynucleotide.
18. The method of claim 17 , further comprising the steps of separating the solid support bound polynucleotide from the mixture, denaturing the target polynucleotide from the solid support bound polynucleotide and isolating the target polynucleotide.