IP Library Granted Patent US 7,521,420
Granted Patent B2
US 7,521,420 · App. 10/872,142 · Granted Apr 21, 2009

Macrocyclic antagonists of the motilin receptor

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Quick Facts
Patent No.
US 7,521,420
App. No.
10/872,142
Granted
Apr 21, 2009
Kind
B2
Abstract

The present invention is directed to novel macrocyclic compounds of formula (I) and their pharmaceutically acceptable salts, hydrates or solvates: wherein R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , n 1 , m, p Z 1 , Z 2 , and Z 3 are as describe in the specification. The invention also relates to compounds of formula (I) which are antagonists of the motilin receptor and are useful in the treatment of disorders associated with this receptor and with or with motility dysfunction.

Claims (106)

1. A compound represented by the general formula (I):

or pharmaceutically acceptable salts thereof wherein:

Z 1 , Z 2 , and Z 3 are independently NR 10 , wherein R 10 is selected from the group consisting of hydrogen and lower alkyl;

R 1 is —(CH 2 ) q R 11 , wherein q is 0, 1 or 2, and R 11 is selected from the group consisting of:

wherein A 1 , A 2 , A 3 , A 4 and A 5 are each optionally present and are independently selected from the group consisting of halogen, alkyl, substituted alkyl, trifluoromethyl, hydroxy, alkoxy and nitro;

and;

B 1 , B 2 , B 3 , B 4 , B 5 and B 7 are independently NR 14a , S or O, wherein R 14a is selected from the group consisting of hydrogen, alkyl, substituted alkyl, formyl, acyl, carboxyalkyl, carboxyaryl, amido, sulfonyl and sulfonamido;

B 6 and B 8 are independently N or CH;

R 2 is hydrogen,

R 3 is selected from the group consisting of: —(CH 2 ) s CH 3 , —CH(CH 3 )(CH 2 ) t CH 3 , —(CH 2 ) u CH(CH 3 ) 2 , —C(CH 3 ) 3 , and —(CH 2 ) y —R 21 , wherein:

s is 0, 1, 2 or 3;

t is 1 or 2;

u is 0 or 1;

y is 0, 1 or 2;

R 21 is selected from the group consisting of:

wherein z1 is 1, 2, 3 or 4; and

E 1 is optionally present and selected from the group consisting of hydroxy and alkoxy;

R 4 and R 5 are each hydrogen;

R 6 is selected from the group consisting of hydrogen, —(CH 2 ) aa CH 3 , —CH 2 SCH 3 —CH 2 CH 2 SCH 3 , —(CH 2 ) bb CH(CH 3 ) 2 , —CH(CH 3 )(CH 2 ) cc CH 3 , —(CH 2 ) dd —NR 22 R 23 , and —(CH 2 ) ee R 24 , wherein

aa is 0, 1, 2 or 3;

bb is 0 or 1;

cc is 1 or 2;

dd is 1, 2, 3 or 4;

ee is 0, 1 or 2;

R 22 and R 23 are independently selected from the group consisting of hydrogen, alkyl, substituted alkyl, formyl, acyl, amido, amidino, sulfonyl and sulfonamido;

R 24 is selected from the group consisting of hydroxy, alkoxy

wherein E 2 is optionally present and is selected from the group consisting of hydroxy and alkoxy; B 9 and B 10 are independently selected from the group consisting of NR 14b , S and O, wherein R 14b is selected from the group consisting of hydrogen, alkyl, substituted alkyl, formyl, acyl, carboxyalkyl, carboxyaryl, amido, sulfonyl and sulfonamido; B 11 is selected from N and CH; and z2 is 1, 2, 3 or 4; and

X is NR 8 , wherein R 8 is selected from the group consisting of hydrogen, lower alkyl, substituted lower alkyl, formyl, acyl, carboxyalkyl, carboxyaryl, amido, sulfonyl, sulfonamido and amidino;

with the provisos that when Z 1 , Z 2 and Z 3 are all NH, R 1 is:

R 2 is:

then R 3 is not:

and when Z 1 , Z 2 and Z 3 are all NH, R 1 is:

R 3 is:

then R 2 is not:

and when Z 1 , Z 2 and Z 3 are all NH, R 2 is:

and R 3 is:

then R 1 is not:

wherein Rp is hydrogen or a protecting group;

m, n 1 and p are 0; and

T is selected from the group consisting of:

wherein

U 3 is CH 2 ;

L 2 is CH or N;

L 5 is CH or N;

L 6 is CR 52 R 53 or O;

R 46 is H or CH 3 ;

R 54 , R 55 , R 56 and R 57 are independently selected from the group consisting of hydrogen and lower alkyl;

R 58 is selected from the group consisting of halogen and amidino; and

(X) is the site of a covalent bond to X in formula (I); and (Z 3 ) is the site of a covalent bond to Z 3 in formula (I).

2. The compound of claim 1 , wherein R 11 is selected from the group consisting of:

wherein R a and R b are independently selected from the group consisting of Cl, F, CF 3 , OCH 3 , OH, CH 3 and C(CH 3 ) 3 .

3. The compound of claim 1 wherein m, n and p are 0; X, Z 1 , Z 2 and Z 3 are NH; and R 2 , R 4 and R 5 are hydrogen, represented by formula (III):

4. The compound of claim 1 selected from the group consisting of:

5. A compound represented by the general formula (I):

or pharmaceutically acceptable salts thereof wherein:

Z 1 , Z 2 , and Z 3 are independently NR 10 , wherein R 10 is selected from the group consisting of hydrogen and lower alkyl;

R 1 is —(CH 2 ) q R 11 , wherein q is 0, 1 or 2, and R 11 is selected from the group consisting of:

wherein A 1 , A 2 and A 3 are each optionally present and are independently selected from the group consisting of halogen, alkyl, substituted alkyl, trifluoromethyl, hydroxy, alkoxy and nitro;

B 1 , B 2 , B 3 , B 4 , B 5 and B 7 are independently NR 14a , S or O, wherein R 14a is selected from the group consisting of hydrogen, alkyl, substituted alkyl, formyl, acyl, carboxyalkyl, carboxyaryl, amido, sulfonyl and sulfonamido;

B 6 and B 8 are independently N or CH;

R 2 is hydrogen;

R 3 is selected from the group consisting of: —(CH 2 ) s CH 3 , —CH(CH 3 )(CH 2 ) t CH 3 , —(CH 2 ) u CH(CH 3 ) 2 , —C(CH 3 ) 3 , and —(CH 2 ) y —R 21 , wherein:

s is 0, 1, 2 or 3;

t is lor 2;

u is 0 or 1;

y is 0, 1 or 2;

R 21 is selected from the group consisting of:

wherein z1 is 1, 2, 3 or 4; and

E 1 is optionally present and selected from the group consisting of hydroxy and alkoxy;

R 4 and R 5 are each hydrogen;

R 6 is each independently selected from the group consisting of hydrogen, —(CH 2 ) aa CH 3 , —CH 2 SCH 3 , —CH 2 CH 2 SCH 3 , —(CH 2 ) bb CH(CH 3 ) 2 , —CH(CH 3 )(CH 2 ) cc CH 3 , —(CH 2 ) dd —NR 22 R 23 , and —(CH 2 ) ee R 24 , wherein

aa is 0, 1, 2 or 3;

bb is 0 or 1;

cc is 1 or 2;

dd is 1, 2, 3 or 4;

ee is 0, 1 or 2;

R 22 and R 23 are independently selected from the group consisting of hydrogen, alkyl, substituted alkyl, formyl, acyl, amido, amidino, sulfonyl and sulfonamido;

R 24 is selected from the group consisting of hydroxy, alkoxy

wherein E 2 is optionally present and is selected from the group consisting of hydroxy and alkoxy; B 9 and B 10 are independently selected from the group consisting of NR 14b , S and O, wherein R 14b is selected from the group consisting of hydrogen, alkyl, substituted alkyl, formyl, acyl, carboxyalkyl, carboxyaryl, amido, sulfonyl and sulfonamido; B 11 is selected from the group consisting of N and CH; and Z2 is 1, 2, 3 or 4; and

X is NR 8 , wherein R 8 is selected from the group consisting of hydrogen, lower alkyl, substituted lower alkyl, formyl, acyl, carboxyalkyl, carboxyaryl, amido, sulfonyl, sulfonamido and amidino;

with the provisos that when Z 1 , Z 2 and Z 3 are all NH, R 1 is:

R 2 is:

then R 3 is not:

and when Z 1 , Z 2 and Z 3 are all NH, R 1 is:

R 3 is:

then R 2 is not:

and when Z 1 , Z 2 and Z 3 are all NH, R 2 is:

and R 3 is:

then R 1 is not:

wherein Rp is hydrogen or a protecting group;

m, n, and p are 0; and

T is selected from the group consisting of:

wherein R 30 and R 31 are independently selected from the group consisting of hydrogen and methyl; and (X) is the site of a covalent bond to X in formula (I); and (Z 3 ) is the site of a covalent bond to Z 3 in formula (I).

6. A pharmaceutical composition comprising:

(a) a compound of claim 1 ; and

(b) a pharmaceutically acceptable carrier.

7. A pharmaceutical composition, comprising:

(a) a compound of claim 4 ; and

(b) a pharmaceutically acceptable carrier.

8. A pharmaceutical composition, comprising:

(c) a compound of claim 5 ; and

(d) a pharmaceutically acceptable carrier.

9. A method of treating a gastrointestinal disorder associated with the motilin receptor or motility dysfunction in humans or other mammals comprising administering a therapeutically effective amount of a compound of claim 1 .

10. A method of treating a gastrointestinal disorder associated with hyperotility or hypermotilinemia in humans or other mammals comprising administering a therapeutically effective amount of a compound of claim 1 .

11. A method of treating irritable bowel syndrome or dyspepsia in humans or other mammals, comprising administering a therapeutically effective amount of a compound of claim 1 .

12. A method of treating Crohn's disease, gastroesophogeal reflux disorders, ulcerative colitis, pancreatitis, infantile hypertrophic pyloric stenosis, carcinoid syndrome, malabsorption syndrome, diarrhea, atrophic colitis or gastritis, gastrointestinal dumping syndrome, postgastroenterectomy syndrome or celiac disease in humans or other mammals comprising administering a therapeutically effective amount of a compound of claim 1 .

Assignments (3)
RELEASE OF PATENT SECURITY INTERESTS RECORDED AT REEL 044949, FRAME 0634 Recorded Nov 16, 2023
From: DEUTSCHE BANK AG NEW YORK BRANCH, AS COLLATERAL AGENT
To: MALLINCKRODT INTERNATIONAL FINANCE S.A.; MALLINCKRODT CB LLC; MALLINCKRODT FINANCE GMBH; MALLINCKRODT US HOLDINGS LLC (F/K/A MALLINCKRODT US HOLDINGS INC.); MALLINCKRODT CARRIBEAN, INC.; MALLINCKRODT US POOL LLC; MNK 2011 LLC (F/K/A MALLINCKRODT INC.); LUDLOW LLC (F/K/A LUDLOW CORPORATION); CNS THERAPEUTICS, INC.; MALLINCKRODT ENTERPRISES HOLDINGS LLC (F/K/A MALLINCKRODT ENTERPRISES HOLDINGS, INC.); MALLINCKRODT ENTERPRISES LLC; MALLINCKRODT LLC; LAFAYETTE PHARMACEUTICALS LLC; LIEBEL-FLARSHEIM COMPANY LLC; MALLINCKRODT BRAND PHARMACEUTICALS LLC (F/K/A MALLINCKRODT BRAND PHARMACEUTICALS, INC.); MALLINCKRODT VETERINARY, INC.; MALLINCKRODT US HOLDINGS LLC; IMC EXPLORATION COMPANY; MEH, INC.; MALLINCKRODT HOSPITAL PRODUCTS IP UNLIMITED COMPANY (F/K/A MALLINCKRODT HOSPITAL PRODUCTS IP LIMITED); MALLINCKRODT ARD IP UNLIMITED COMPANY (F/K/A MALLINCKRODT ARD IP LIMITED); OCERA THERAPEUTICS LLC (F/K/A OCERA THERAPEUTICS, INC.); SPECGX LLC; STRATATECH CORPORATION; SUCAMPO PHARMA AMERICAS LLC; VTESSE LLC (F/K/A VTESSE INC.); MALLINCKRODT PHARMACEUTICALS IRELAND LIMITED; MALLINCKRODT PHARMA IP TRADING UNLIMITED COMPANY (F/K/A MALLINCKRODT PHARMA IP TRADING D.A.C.); INFACARE PHARMACEUTICAL CORPORATION; ST SHARED SERVICES LLC; THERAKOS, INC.; IKARIA THERAPEUTICS LLC; INO THERAPEUTICS LLC
Reel/Frame 065610/0460 →
NOTICE OF GRANT OF SECURITY INTEREST IN INTELLECTUAL PROPERTY Recorded Dec 22, 2017
From: OCERA THERAPEUTICS, INC.
To: DEUTSCHE BANK AG NEW YORK BRANCH, AS COLLATERAL AGENT
Reel/Frame 044949/0634 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 17, 2014
From: TRANZYME PHARMA INC.
To: OCERA THERAPEUTICS, INC.
Reel/Frame 031994/0084 →