Compositions isolated from forage grasses and methods of use
Isolated polynucleotides encoding polypeptides active in lignin, fructan and tannin biosynthetic pathways are provided, together with expression vectors and host cells comprising such isolated polynucleotides. Methods for the use of such polynucleotides and polypeptides are also provided.
1 . An isolated polynucleotide comprising a sequence selected from the group consisting of:
(a) SEQ ID NO: 1-62 and 125-162;
(b) complements of SEQ ID NO: 1-62 and 125-162;
(c) reverse complements of SEQ ID NO: 1-62 and 125-162; and
(d) reverse sequences of SEQ ID NO: 1-62 and 125-162;
2 . An isolated polynucleotide comprising a sequence selected from the group consisting of:
(a) sequences having at least 75% identity to a sequence of SEQ ID NO: 1-62 and 125-162;
(b) sequences having at least 90% identity to a sequence of SEQ ID NO: 1-62 and 125-162; and
(c) sequences having at least 95% identity to a sequence of SEQ ID NO: 1-62 and 125-162,
wherein the polynucleotide encodes a polypeptide having substantially the same functional properties as a polypeptide encoded by SEQ ID NO: 1-62 and 125-162.
3 . An isolated oligonucleotide probe or primer comprising at least 10 contiguous residues complementary to 10 contiguous residues of a nucleotide sequence recited in claim 1 .
4 . A kit comprising a plurality of oligonucleotide probes or primers of claim 3 .
5 . A genetic construct comprising an isolated polynucleotide of any one of claims 1 and 2 .
6 . A transgenic cell comprising a construct according to claim 5 .
7 . A genetic construct comprising, in the 5′-3′ direction:
(a) a gene promoter sequence;
(b) a polynucleotide sequence comprising at least one of the following: (1) a polynucleotide coding for at least a functional portion of a polypeptide encoded by a polynucleotide of any one of claims 1 and 2 ; and (2) a polynucleotide comprising a non-coding region of a polynucleotide of any one of claims 1 and 2 ; and
(c) a gene termination sequence.
8 . The genetic construct of claim 7 , wherein the polynucleotide is in a sense orientation.
9 . The genetic construct of claim 7 , wherein the polynucleotide is in an anti-sense orientation.
10 . A transgenic plant cell comprising a construct of claim 7 .
11 . A plant comprising a transgenic plant cell according to claim 10 , or fruit or seeds or progeny thereof.
12 . A method for modulating one or more of the lignin composition, fructan composition and tannin composition of a plant, comprising stably incorporating into the genome of the plant at least one polynucleotide of any one of claims 1 and 2 .
13 . The method of claim 12 , wherein the plant is selected from the group consisting of grasses.
14 . The method of claim 13 , wherein the plant is selected from the group consisting of: Lolium perenne and Festuca arundinacea.
15 . The method of claim 12 , comprising stably incorporating into the genome of the plant a construct of claim 7 .
16 . A method for producing a plant having one or more of altered lignin composition, altered fructan composition and altered tannin composition, comprising:
(a) transforming a plant cell with a construct of claim 7 to provide a transgenic cell; and
(b) cultivating the transgenic cell under conditions conducive to regeneration and mature plant growth.
17 . A method for modifying the activity of a polypeptide involved in a lignin, fructan or tannin biosynthetic pathway in a plant, comprising stably incorporating into the genome of the plant a construct of claim 7 .
18 . An isolated polypeptide comprising an amino acid sequence selected from the group consisting of: SEQ ID NO: 63-124 and 163-190.
19 . An isolated polypeptide comprising an amino acid sequence selected from the group consisting of:
(a) sequences having at least 75% identity to a sequence of SEQ ID NO: 63-124 and 163-190;
(b) sequences having at least 90% identity to a sequence of SEQ ID NO: 63-124 and 163-190; and
(c) sequences having at least 95% identity to a sequence of SEQ ID NO: 63-124 and 163-190
wherein the polypeptide has substantially the same functional properties as a polypeptide of SEQ ID NO: 63-124 and 163-190.
20 . An isolated polynucleotide that encodes a polypeptide of claim 18 .
21 . An isolated polypeptide encoded by a polynucleotide of any one of claims 1 and 2 .