IP Library Granted Patent US 7,368,476
Granted Patent B2
US 7,368,476 · App. 11/100,781 · Granted May 6, 2008

Hydroxamates as therapeutic agents

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Quick Facts
Patent No.
US 7,368,476
App. No.
11/100,781
Granted
May 6, 2008
Kind
B2
Abstract

The present invention is directed to certain hydroxamate derivatives that are inhibitors of histone deacetylase and are therefore useful in the treatment of diseases associated with histone deacetylase activity. Pharmaceutical compositions and processes for preparing these compounds are also disclosed.

Claims (24)

1. A compound of Formula (I):

wherein:

R 1 is hydrogen or alkyl;

X is —O—

Y is alkylene;

Ar 1 is phenylene wherein said Ar 1 is optionally substituted with one or two groups independently selected from alkyl, halo, hydroxy, alkoxy, haloalkoxy, or haloalkyl;

R 3 is hydrogen, alkyl, hydroxyalkyl, or alkoxyalkyl;

Ar 2 is heteroaryl, wherein said Ar 2 is optionally substituted with one or two groups independently selected from alkyl, halo, haloalkyl, alkoxy, alkoxyalkyl, hydroxyalkoxy, hydroxyalkoxyalkyl, alkoxyalkyloxy, alkoxyalkyloxyalkyl, aminoalkyl, aminoalkoxy, haloalkoxy, haloalkoxyalkyl, optionally substituted phenylalkyl, optionally substituted phenyloxyalkyl, optionally substituted heteroaryl, optionally substituted heteroaralkyloxy, optionally substituted heteroaryloxyalkyl, optionally substituted heterocycloalkylalkyl, optionally substituted heterocycloalkyloxy, optionally substituted heterocycloalkylalkyloxy, -alkylene-S(O) n R a , where n is 0 to 2 and R a is hydroxyalkyl or optionally substituted phenyl, -alkylene-NR e -alkyleneCONR c R d , where R c is hydroxyl and R d and R e are independently hydrogen or alkyl, or carboxyalkylaminoalkyl; and

one of R 4 and R 5 is hydrogen or alkyl and the other is —CH 2 R 6 where R 6 is aryl, heteroaryl, heterocycloalkyl, hydroxyalkyloxy, alkoxyalkyloxy, aminoalkyloxy, aryloxy, aralkyloxy, heteroaryloxy, heteroaralkyloxy, heterocycloalkyloxy, heterocycloalkylalkyloxy, alkoxyalkyl-S(O) n —, hydroxyalkyl-S(O) n —, —S(O) n -aryl, aralkyl-S(O) n —, —S(O) n -heteroaryl, heteroaralkyl-S(O) n —, S(O) n —, heterocycloalkyl, heterocycloalkylalkyl-S(O) n —, where n is 0, 1, or 2, —NR 7 R 8 , where R 7 is hydrogen or alkyl and R 8 is alkyl, hydroxyalkyl, alkoxyalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocycloalkyl, or heterocycloalkylalkyl, —NR 9 SO 2 R 10 , where R 9 is hydrogen or alkyl and R 10 is alkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocycloalkyl, or heterocycloalkylalkyl, or —NR 11 COR 12 , where R 11 is hydrogen or alkyl and R 12 is alkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocycloalkyl, or heterocycloalkylalkyl; or a pharmaceutically acceptable salt thereof.

2. The compound of claim 1 wherein R 1 , R 3 , and R 4 are hydrogen.

3. The compound of claim 1 wherein R 1 , R 3 , and R 5 are hydrogen.

4. The compound of claim 1 wherein R 1 , R 3 , and R 4 are hydrogen and R 5 is —CH 2 NR 7 R 8 , where R 7 is hydrogen or alkyl and R 8 is alkyl, hydroxyalkyl, alkoxyalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocycloalkyl, or heterocycloalkylalkyl.

5. The compound of claim 1 wherein R 1 , R 3 , and R 4 are hydrogen and R 5 is —CH 2 -heterocycloalkyl.

6. The compound of claim 1 wherein R 1 , R 3 , and R 4 are hydrogen, and R 5 is —CH 2 R 6 where R 6 is hydroxyalkyloxy, alkoxyalkyloxy, aryloxy, aralkyloxy, heteroaryloxy, heteroaralkyloxy, heterocycloalkyloxy, heterocycloalkylalkyloxy, alkoxyalkyl-S(O) n —, hydroxyalkyl-S(O) n —, —S(O) n -aryl, aralkyl-S(O) n —, —S(O) n -heteroaryl, heteroaralkyl-S(O) n —, —S(O) n -heterocycloalkyl, heterocycloalkylalkyl-S(O) n —, where n is 0, 1, or 2.

7. The compound of claim 1 wherein Y is ethylene, R 1 , R 3 , and R 4 are hydrogen, and R 5 is —CH 2 NR 7 R 8 , where R 7 is hydrogen or alkyl and R 8 is alkyl, hydroxyalkyl, alkoxyalkyl, aryl, aralkyl, heteroaryl, heteroaralkyl, heterocycloalkyl, or heterocycloalkylalkyl.

8. The compound of claim 1 wherein Y is ethylene, R 1 , R 3 , and R 4 are hydrogen, and R 5 is —CH 2 -heterocycloalkyl.

9. The compound of claim 1 wherein Y is ethylene, R 1 , R 3 , and R 4 are hydrogen, and R 5 is —CH 2 R 6 where R 6 is hydroxyalkyloxy, alkoxyalkyloxy, aryloxy, aralkyloxy, heteroaryloxy, heteroaralkyloxy, heterocycloalkyloxy, heterocycloalkylalkyloxy, alkoxyalkyl-S(O) n —, hydroxyalkyl-S(O) n —, —S(O) n -aryl, aralkyl-S(O) n —, —S(O) n -heteroaryl, heteroaralkyl-S(O) n —, —S(O) n -heterocycloalkyl, heterocycloalkylalkyl-S(O) n —, where n is 0,1, or 2.

10. The compound of claim 7 wherein the heteroaryl of Ar 2 is benzofuran-2-yl optionally substituted with a substituent selected from chloro, fluoro, trifluoromethyl, methyl, ethyl, methoxy, 1-cyclopropylpiperidin-4-yloxy, 1-(2,2,2-trifluoroethyl)piperidin-4-yloxy, N,N-dimethylaminomethyl, N,N-diethylaminomethyl, 2-methoxyethoxymethyl, phenoxymethyl, 2-methoxyethoxy, 2-morpholin-4-ylethoxy, pyridin-3-ylmethoxy, 2-hydroxyethoxy, 2-N,N-dimethylaminoethoxy, methoxymethyl, 3-i-propoxymethyl, morpholin-4-ylmethyl, 3-hydroxypropyloxymethyl, 2-fluorophenoxymethyl, 3-fluorophenoxymethyl, 4-fluorophenoxy-methyl, 3-methoxypropyloxymethyl, pyridin-4-yloxymethyl, 2,4,6-trifluorophenoxymethyl, 2-oxopyridin-1-ylmethyl, 2,2,2-trifluoroethoxymethyl, 4-imidazol-1-ylphenoxymethyl, 4-[1,2,4-triazin-1-yl-phenoxymethyl, 2-phenylethyl, pyrrolidin-1-ylmethyl, piperidin-1-ylmethyl, 4-trifluoromethylpiperidin-ylmethyl, 4-methylpiperazin-ylmethyl, 3,3,3-trifluoropropyloxymethyl, 4-fluorophenylthiomethyl, 4-fluorophenylsulfinylmethyl, 4-fluorophenylsulfonylmethyl, pyridin-3-ylmethyloxymethyl, tetrahydropyran-4-yloxy, 2,2,2-trifluoroethyloxy, 2-pyrrolidin-1-ylethyloxy, piperidin-4-yloxy, N-methyl-N-benzylaminomethyl, N-methyl-N-2-phenylethylaminomethyl, 3-hydroxypropylthiomethyl, 3-hydroxypropylsulfinylmethyl, 3-hydroxypropylsulfonyl-methyl, N-methyl-N-2-indol-3-ylethylaminomethyl, 2-(4-trifluoromethylphenyl)ethyl, 2-(3-trifluoromethoxyphenyl)ethyl, N-hydroxyaminocarbonyl-methylaminomethyl, or 3-(2-carboxyethylamino-methyl); and

the —CONHOH and X groups are at the 1 and 4 position of the phenylene ring.

11. The compound of claim 8 wherein the heteroaryl of Ar 2 is benzofuran-2-yl optionally substituted with a substituent selected from chloro, fluoro, trifluoromethyl, methyl, ethyl, methoxy, 1-cyclopropylpiperidin-4-yloxy, 1-(2,2,2-trifluoroethyl)piperidin-4-yloxy, N,N-dimethylaminomethyl, N,N-diethylaminomethyl, 2-methoxyethoxymethyl, phenoxymethyl, 2-methoxyethoxy, 2-morpholin-4-ylethoxy, pyridin-3-ylmethoxy, 2-hydroxyethoxy, 2-N,N-dimethylaminoethoxy, methoxymethyl, 3-i-propoxymethyl, morpholin-4-ylmethyl, 3-hydroxypropyloxymethyl, 2-fluorophenoxymethyl, 3-fluorophenoxymethyl, 4-fluorophenoxy-methyl, 3-methoxypropyloxymethyl, pyridin-4-yloxymethyl, 2,4,6-trifluorophenoxymethyl, 2-oxopyridin-1-ylmethyl, 2,2,2-trifluoroethoxymethyl, 4-imidazol-1-ylphenoxymethyl, 4-[1,2,4-triazin-1-yl-phenoxymethyl, 2-phenylethyl, pyrrolidin-1-ylmethyl, piperidin-1-ylmethyl, 4-trifluoromethylpiperidin-ylmethyl, 4-methylpiperazin-ylmethyl, 3,3,3-trifluoropropyloxy-methyl, 4-fluorophenylthiomethyl, 4-fluorophenylsulfinylmethyl, 4-fluorophenylsulfonyl-methyl, pyridin-3-ylmethyloxymethyl, tetrahydropyran-4-yloxy, 2,2,2-trifluoroethyloxy, 2-pyrrolidin-1-ylethyloxy, piperidin-4-yloxy, N-methyl-N-benzylaminomethyl, N-methyl-N-2-phenylethylaminomethyl, 3-hydroxypropylthiomethyl, 3-hydroxypropylsulfinylmethyl, 3-hydroxypropylsulfonyl-methyl, Ar-methyl-N-2-indol-3-ylethylaminomethyl, 2-(4-trifluoromethylphenyl)ethyl, 2-(3-trifluoromethoxyphenyl)ethyl, N-hydroxyaminocarbonyl-methylaminomethyl, or 3-(2-carboxyethylamino-methyl); and

the —CONHOH and X groups are at the 1 and 4 position of the phenylene ring.

12. The compound of claim 9 wherein the heteroaryl of Ar 2 is benzofuran-2-yl optionally substituted with a substituent selected from chloro, fluoro, trifluoromethyl, methyl, ethyl, methoxy, 1-cyclopropylpiperidin-4-yloxy, 1-(2,2,2-trifluoroethyl)piperidin-4-yloxy, N,N-dimethylamino-methyl, N,N-diethylaminomethyl, 2-methoxyethoxymethyl, phenoxymethyl, 2-methoxyethoxy, 2-morpholin-4-ylethoxy, pyridin-3-ylmethoxy, 2-hydroxyethoxy, 2-N,N-dimethylaminoethoxy, methoxymethyl, 3-i-propoxymethyl, morpholin-4-ylmethyl, 3-hydroxypropyloxymethyl, 2-fluorophenoxymethyl, 3-fluorophenoxymethyl, 4-fluorophenoxy-methyl, 3-methoxypropyloxymethyl, pyridin-4-yloxymethyl, 2,4,6-trifluorophenoxymethyl, 2-oxopyridin-1-ylmethyl, 2,2,2-trifluoroethoxymethyl, 4-imidazol-1-ylphenoxymethyl, 4-[1,2,4-triazin-1-yl-phenoxy-methyl, 2-phenylethyl, pyrrolidin-1-ylmethyl, piperidin-1-ylmethyl, 4-trifluoromethyl-piperidin-ylmethyl, 4-methylpiperazin-ylmethyl, 3,3,3-trifluoropropyloxymethyl, 4-fluoro-phenylthiomethyl, 4-fluorophenylsulfinylmethyl, 4-fluorophenylsulfonylmethyl, pyridin-3-ylmethyloxymethyl, tetrahydropyran-4-yloxy, 2,2,2-trifluoroethyloxy, 2-pyrrolidin-1-ylethyloxy, piperidin-4-yloxy, N-methyl-N-benzylaminomethyl, N-methyl-N-2-phenylethyl-aminomethyl, 3-hydroxypropylthiomethyl, 3-hydroxypropylsulfinylmethyl, 3-hydroxypropyl-sulfonyl-methyl, N-methyl-N-2-indol-3-ylethylaminomethyl, 2-(4-trifluoromethylphenyl)ethyl, 2-(3-trifluoromethoxyphenyl)ethyl, AT-hydroxyaminocarbonyl-methylaminomethyl, or 3-(2-carboxyethylamino-methyl); and

the —CONHOH and X groups are at the 1 and 4 position of the phenylene ring.

13. A pharmaceutical composition comprising a compound of claim 1 and a pharmaceutically acceptable excipient.

Assignments (6)
CORRECTIVE ASSIGNMENT TO CORRECT THE CONVEYING PARTY DATA PREVIOUSLY RECORDED ON REEL 036126 FRAME 0377. ASSIGNOR(S) HEREBY CONFIRMS THE MERGER. Recorded May 17, 2016
From: OXFORD AMHERST CORPORATION; PHARMACYCLICS, INC.
To: PHARMACYCLICS, INC.
Reel/Frame 038722/0776 →
CORRECTIVE ASSIGNMENT TO CORRECT THE CONVEYING PARTY DATA PREVIOUSLY RECORDED ON REEL 036126 FRAME 0398. ASSIGNOR(S) HEREBY CONFIRMS THE MERGER AND CHANGE OF NAME. Recorded May 17, 2016
From: PHARMACYCLICS, INC.; OXFORD AMHERST LLC
To: PHARMACYCLICS LLC
Reel/Frame 038722/0849 →
MERGER Recorded Jul 16, 2015
From: OXFORD AMHERST CORPORATION
To: PHARMACYCLICS, INC.
Reel/Frame 036126/0377 →
MERGER AND CHANGE OF NAME Recorded Jul 16, 2015
From: PHARMACYCLICS, INC.; OXFORD AMHERST LLC
To: PHARMACYCLICS LLC
Reel/Frame 036126/0398 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 10, 2007
From: SETTI, EDUARDO L.
To: AXYS PHARMACEUTICALS, INC.
Reel/Frame 019537/0165 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 10, 2007
From: AXYS PHARMACEUTICALS, INC.
To: PHARMACYCLICS, INC.
Reel/Frame 019539/0250 →