IP Library Granted Patent US 7,498,128
Granted Patent B2
US 7,498,128 · App. 11/296,829 · Granted Mar 3, 2009

Methods of determining contributions to metabolic pathways

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Quick Facts
Patent No.
US 7,498,128
App. No.
11/296,829
Granted
Mar 3, 2009
Kind
B2
Abstract

The present invention provides methods for assessing contribution of one or more pathways to the biosynthesis of a metabolite, e.g., a lipid using the levels of the product made and the metabolite precursors for each pathway.

Claims (23)

1. A method of determining a contribution of a first pathway and a contribution of a second pathway, which is different from the first pathway, to biosynthesis of a lipid class in an individual, wherein the lipid class, which comprises a marker composition, is produced from a first precursor by the first pathway and from a second precursor by the second pathway, wherein the first precursor is different from the second precursor, comprising

determining P1, wherein P1 is a level of a marker composition and, wherein the first precursor is transformed to said lipid class via the first pathway,

determining P2, wherein P2 is a level of said marker composition, wherein said second precursor is transformed to the lipid class via the second pathway, wherein the first precursor is different from the second precursor and wherein the first pathway is different from the second pathway,

determining TL, wherein TL is a level of the marker composition in the lipid class,

and then calculating the contribution of the first pathway as (TL−P2)/(P1−P2) and the contribution of the second pathway as (TL−P1)/(P2−P1), thereby determining the contribution of the first pathway and the contribution of the second pathway to the biosynthesis of the lipid class.

2. The method of claim 1 , wherein the marker composition is a SN-1 position fatty acid.

3. The method of claim 1 , wherein the marker composition is a fatty acid selected from the group consisting of 16:0, 18:0, 18:1, 18:2, 20:4, and 22:6.

4. The method of claim 1 , wherein the level of the marker composition is represented by the level of 18:0 or 16:0.

5. The method of claim 1 , wherein the level of the marker composition is represented by the ratio of at least two fatty acids at SN-1 position.

6. The method of claim 1 , wherein the level of the marker composition is represented by the ratio of 18:0 to 16:0.

7. The method of claim 1 , wherein the level of the marker composition is represented by the ratio of any two of 18:0, 16:0, 18:1, 18:2, 20:4, and 22:6.

8. The method of claim 1 , wherein the level of the marker composition is represented by the ratio of any three of 18:0, 16:0, 18:1, 18:2, 20:4, and 22:6.

9. The method of claim 1 , wherein the lipid class is phosphatidylcholine.

10. The method of claim 1 , wherein the lipid class is phosphatidylethanolamine, cholesterol ester, phosphatidylserine, phosphatidylinositol, cardiolipin, triacylglyceride, diacylglyceride, phosphatidic acid, free fatty acid, sphingomyelin, phosphatidylglycerol, or lysophospholipids.

11. The method of claim 1 , wherein the lipid class is phosphatidylcholine, the first pathway is phosphatidylethanolamine-N-methyltransferase (PEMT) pathway, and the second pathway is CDP-choline pathway.

12. The method of claim 1 , wherein the lipid class is phosphatidylcholine, the first pathway is phosphatidylethanolamine-N-methyltransferase (PEMT) pathway and the first precursor is phosphatidylethanolamine.

13. The method of claim 1 , wherein the lipid class is phosphatidylcholine, the second pathway is CDP-choline pathway and the second precursor is selected from the group consisting of diacylglyceride, phosphatidic acid, and triacylglyceride.

14. The method of claim 1 , wherein the lipid class is phosphatidylethanolamine, the first pathway is phosphatidylserine decarboxylase pathway and the second pathway is CDP-ethanolamine pathway.

15. The method of claim 1 , wherein the lipid class is phosphatidylethanolamine, the first pathway is phosphatidylserine decarboxylase pathway and the first precursor is phosphatidylserine.

16. The method of claim 1 , wherein the lipid class is in plasma.

17. The method of claim 1 , wherein the lipid class is in liver.

18. The method of claim 1 , wherein the lipid class is in brain, heart, mammary gland, or intestine.

19. The method of claim 1 wherein the marker composition is a fatty acid.

Assignments (11)
SECURITY INTEREST Recorded Jan 31, 2017
From: TRUE HEALTH IP LLC
To: MONROE CAPITAL MANAGEMENT ADVISORS, LLC, AS ADMINISTRATIVE AGENT
Reel/Frame 041575/0879 →
RELEASE OF SECURITY INTEREST Recorded Jan 19, 2017
From: CVF BEADSEA LLC, AS COLLATERAL AGENT
To: HEALTH DIAGNOSTIC LABORATORY, INC.; INTEGRATED HEALTH LEADERS, LLC
Reel/Frame 041013/0469 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 21, 2016
From: TRUE HEALTH DIAGNOSTICS LLC
To: TRUE HEALTH IP LLC
Reel/Frame 040386/0852 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 3, 2016
From: HEALTH DIAGNOSTIC LABORATORY, INC.
To: TRUE HEALTH DIAGNOSTICS, LLC
Reel/Frame 037879/0057 →
SECURITY INTEREST Recorded Aug 10, 2015
From: HEALTH DIAGNOSTIC LABORATORY, INC.; INTEGRATED HEALTH LEADERS, LLC
To: CVF BEADSEA LLC, AS COLLATERAL AGENT
Reel/Frame 036292/0164 →
RELEASE OF SECURITY INTEREST Recorded Jun 10, 2014
From: HERCULES TECHNOLOGY GROWTH CAPITAL, INC.
To: TETHYS BIOSCIENCE, INC.
Reel/Frame 033114/0137 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 6, 2014
From: TETHYS BIOSCIENCE, INC.
To: HEALTH DIAGNOSTIC LABORATORY, INC.
Reel/Frame 031894/0337 →
SECURITY AGREEMENT Recorded Jul 5, 2012
From: TETHYS BIOSCIENCE, INC.
To: HERCULES TECHNOLOGY GROWTH CAPITAL, INC.
Reel/Frame 028503/0289 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 28, 2010
From: LIPOMICS TECHNOLOGIES INC.
To: TETHYS BIOSCIENCE, INC.
Reel/Frame 023861/0775 →
MERGER Recorded Jan 22, 2009
From: LIPOMICS TECHNOLOGIES, INC.
To: TETHYS BIOSCIENCE, INC.
Reel/Frame 022143/0040 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 26, 2006
From: WATKINS, STEVEN M.
To: LIPOMICS TECHNOLOGIES, INC.
Reel/Frame 017214/0266 →