IP Library Granted Patent US 7,282,337
Granted Patent B1
US 7,282,337 · App. 11/404,695 · Granted Oct 16, 2007

Methods for increasing accuracy of nucleic acid sequencing

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Quick Facts
Patent No.
US 7,282,337
App. No.
11/404,695
Granted
Oct 16, 2007
Kind
B1
Abstract

The invention provides methods for improving the accuracy of a sequencing-by-synthesis reaction by sequencing at least a portion of a template and at least a portion of template complementary sequence.

Claims (15)

1. A method of increasing accuracy of nucleic acid sequencing, the method comprising the steps of:

a) exposing a duplex comprising a template and a primer to a polymerase and one or more nucleotide comprising a detectable label under conditions sufficient for template-dependent nucleotide addition to said primer, wherein said template is individually optically resolvable;

b) identifying nucleotide incorporated into said primer;

c) neutralizing said detectable label or removing said detectable label from said incorporated nucleotide;

d) repeating steps a)-c), thereby determining a nucleotide sequence incorporated into said primer of said duplex;

e) removing the template from the primer of step d);

f) adding a polynucleotide to a 3′ terminus of the primer from step e) to form a template;

g) exposing the template of step f) to a primer capable of hybridizing to said added polynucleotide to form template/primer duplex, and repeating steps a) through d) to sequence a portion of the template, wherein at least a portion of the sequence obtained is complementary to the nucleotide sequence of d), thereby increasing the accuracy of nucleic acid sequencing.

2. The method of claim 1 , wherein the sequence obtained in c) is compared with a complement of the sequence obtained in f).

3. The method of claim 1 , further comprising repeating steps (e) through (g).

4. The method of claim 1 , wherein said label is an optically-detectable label.

5. The method of claim 4 , wherein said optically-detectable label is a fluorescent label.

6. The method of claim 5 , wherein said fluorescent label is selected from the group consisting of fluorescein, rhodamine, cyanine, Cy5, Cy3, BODIPY, alexa, and derivatives thereof.

7. The method of claim 1 , wherein said duplex is attached to a surface.

8. The method of claim 1 , wherein said primer is attached to a surface.

Assignments (8)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 28, 2013
From: HELICOS BIOSCIENCES CORPORATION
To: FLUIDIGM CORPORATION
Reel/Frame 030714/0546 →
LICENSE Recorded Jun 28, 2013
From: FLUIDIGM CORPORATION
To: PACIFIC BIOSCIENCES OF CALIFORNIA, INC.
Reel/Frame 030714/0598 →
LICENSE Recorded Jun 28, 2013
From: FLUIDIGM CORPORATION
To: SEQLL, LLC
Reel/Frame 030714/0633 →
LICENSE Recorded Jun 28, 2013
From: FLUIDIGM CORPORATION
To: COMPLETE GENOMICS, INC.
Reel/Frame 030714/0686 →
LICENSE Recorded Jun 28, 2013
From: FLUIDIGM CORPORATION
To: ILLUMINA, INC.
Reel/Frame 030714/0783 →
RELEASE OF SECURITY INTEREST Recorded Jan 18, 2012
From: GENERAL ELECTRIC CAPITAL CORPORATION
To: HELICOS BIOSCIENCES CORPORATION
Reel/Frame 027549/0565 →
SECURITY AGREEMENT Recorded Nov 22, 2010
From: HELICOS BIOSCIENCES CORPORATION
To: GENERAL ELECTRIC CAPITAL CORPORATION
Reel/Frame 025388/0347 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 20, 2006
From: HARRIS, TIMOTHY D.
To: HELICOS BIOSCIENCES CORPORATION
Reel/Frame 018012/0550 →