IP Library Patent Application 11438959
Patent Application
App. No. 11/438,959

System for detection of nucleic acids

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Quick Facts
Patent No.
US None
App. No.
11/438,959
Abstract

System, including methods, apparatus, and kits, for detection of nucleic acids.

Claims (26)

1 . A device to facilitate detection of a nucleic acid analyte in a sample, comprising:

an optical element structured as a hologram and including a probe that is a peptide nucleic acid and that selectively binds a nucleic acid analyte, the hologram having an optical characteristic that changes visibly when the nucleic acid analyte binds the probe.

2 . The device of claim 1 , further comprising a frame that holds the optical element and that defines a compartment adjacent the optical element, wherein the compartment includes reagents for amplification of the nucleic acid analyte.

3 . The device of claim 2 , wherein the frame defines an input site for receiving a sample to test for the nucleic acid analyte, and wherein the input site is separated from the optical element by a valve that can be dissolved by the sample.

4 . The device of 2 , wherein the frame is a strip configured to serve as a handle for manipulation by hand.

5 . A device to facilitate detection of a nucleic acid analyte in a sample, comprising:

an optical element having a patterned variation in local optical character and including an analog probe that selectively binds a nucleic acid analyte, the analog probe having an analog backbone that is substantially less charged than a corresponding phosphodiester backbone,

wherein the optical element has an optical characteristic created by the patterned variation in local optical character, and

wherein the optical characteristic changes when the nucleic acid analyte binds the analog probe.

6 . The device of claim 5 , wherein the patterned variation includes cyclical changes in the local optical character of the optical element along a line through the optical element.

7 . The device of claim 5 , wherein the local optical character is a refractive index of regions within the optical element.

8 . The device of claim 5 , wherein the optical element includes a photographic emulsion exposed to light disposed in an interference pattern and then chemically processed, and wherein the patterned variation corresponds to the interference pattern.

9 . The device of claim 8 , wherein the patterned variation is produced by local variations in size, number, and/or chemical structure of grains including silver in the photographic emulsion after chemical processing.

10 . The device of claim 5 , wherein the analog backbone corresponds to a peptide backbone.

11 . The device of claim 5 , wherein the optical element is a gel.

12 . The device of claim 11 , wherein the gel at least substantially includes gelatin.

13 . The device of claim 5 , wherein the optical characteristic changes visibly when the nucleic acid analyte binds the analog probe.

14 . The device of claim 13 , wherein the optical element changes color when the nucleic acid analyte binds the analog probe.

15 . The device of claim 5 , further comprising a frame that holds the optical element and that defines a compartment adjacent the optical element, wherein the compartment includes reagents for amplification of the nucleic acid analyte.

16 . The device of claim 15 , wherein the frame defines an input site for receiving a sample, and wherein the input site is separated from the optical element by a valve that can be dissolved by the sample.

17 . The device of 15 , wherein the frame is a strip configured to serve as a handle for manipulation by hand.

18 . A method of detection of a nucleic acid analyte in a sample, comprising:

contacting the device of claim 5 with a nucleic acid analyte in a sample such that the nucleic acid analyte, if present, alters the optical characteristic; and

detecting a change, if any, in the optical characteristic produced by the step of contacting, thereby providing information about presence, absence, and/or amount of the nucleic acid analyte in the sample.

19 . The method of claim 18 , further comprising a step of copying the nucleic acid analyte such that the nucleic acid analyte is amplified.

20 . The method of claim 18 , wherein a barrier separates the sample from the optical element before the step of contacting, and wherein the step of contacting includes a step of breaching the barrier with the sample.

Assignments (7)
LIEN RELEASE Recorded Apr 9, 2013
From: BANK OF AMERICA, N.A.
To: APPLIED BIOSYSTEMS, INC.
Reel/Frame 030182/0677 →
MERGER Recorded Feb 26, 2010
From: APPLIED BIOSYSTEMS INC.
To: APPLIED BIOSYSTEMS, LLC
Reel/Frame 023985/0801 →
CHANGE OF NAME Recorded Feb 26, 2010
From: APPLERA CORPORATION
To: APPLIED BIOSYSTEMS INC.
Reel/Frame 023994/0538 →
MERGER Recorded Feb 26, 2010
From: APPLIED BIOSYSTEMS INC.
To: APPLIED BIOSYSTEMS, LLC
Reel/Frame 023994/0587 →
SECURITY AGREEMENT Recorded Dec 5, 2008
From: APPLIED BIOSYSTEMS, LLC
To: BANK OF AMERICA, N.A, AS COLLATERAL AGENT
Reel/Frame 021976/0001 →
CHANGE OF NAME Recorded Aug 5, 2008
From: APPLERA CORPORATION
To: APPLIED BIOSYSTEMS INC.
Reel/Frame 021340/0929 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 8, 2006
From: VAN CAMP, JOHN R.; STERN, SETH R.
To: APPLERA CORPORATION
Reel/Frame 018240/0903 →