IP Library Granted Patent US 7,308,365
Granted Patent B2
US 7,308,365 · App. 11/439,161 · Granted Dec 11, 2007

Automated projection spectroscopy (APSY)

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Quick Facts
Patent No.
US 7,308,365
App. No.
11/439,161
Granted
Dec 11, 2007
Kind
B2
Abstract

A method of projection spectroscopy for N-dimensional NMR experiments with the following steps. Data recording through; a) selection of N-dimensional NMR experiments out of a group of N-dimensional experiments, selection of the dimensionalities (D i ) of the projections and unconstrained selection of j sets of projection angles, with j≧2; b) recording of discrete sets of j projections from the N-dimensional NMR experiments at the selected projection angles; c) peak picking and creating a peak list for each of the j projection spectra is characterized by d) automated identification of peaks in the projection spectra that arise from the same resonance in the N-dimensional spectrum (N≧3) using vector algebra to exploit geometrical properties of projections in the N-dimensional space, and computation of a N-dimensional peak list using vector algebra to exploit geometrical properties of projections in the N-dimensional space. A reliable method of automated projection spectroscopy without restrictions on projection angles and dimensionality is thereby realized.

Claims (25)

1. A method of projection spectroscopy data recording for N-dimensional nuclear magnetic resonance (NMR) experiments, the method comprising the steps of:

a) selecting N-dimensional NMR experiments out of a group of N-dimensional experiments, selecting dimensionalities (D i ) of projections, and unconstrained selecting of j sets of projection angles, wherein j≧2;

b) recording discrete sets of j projections from the N-dimensional NMR experiments at the selected projection angles:

c) peak picking and creating a peak list for each of the j projection spectra;

d) automatically identifying peaks in the projection spectra that arise from a same resonance in the N-dimensional spectrum (N≧3) using vector algebra to exploit geometrical properties of projections in N-dimensional space and computing an N-dimensional peak list using vector algebra to exploit geometrical properties of the projections in the N-dimensional space, thereby determining resonance positions in N-dimensional frequency space; and

e) storing the peak list of step d), wherein step d) comprises the steps of:

d1) computing candidate points (C), which are intersection points in the N-dimensional spectrum of subspaces arising from peaks in x selected peak lists from the j peak lists created in step c), wherein x is a smallest number that warrants an existence of intersection points;

d2) calculating a number S of intersecting subspaces for each candidate point (C) using all j peak lists;

d3) creating a peak subgroup list by identifying all peaks that contribute to a selected candidate point (C);

d4) repeating steps d1) to d3) k−1 times, wherein k≧1;

d5) merging the k peak subgroup lists; and

d6) calculating peak positions in the N-dimensional spectrum based on peak subgroups of the peak subgroup lists in the merged list obtained in step d5).

2. The method of claim 1 , wherein only candidate points (C) are considered for which at least S min intersecting subspaces contribute.

3. The method of claim 1 , wherein a ranking and deletion of subgroups is carried out following step d2).

4. The method of claim 1 , wherein a ranking and deletion of subgroups is carried out following step d5).

5. The method of claim 1 , wherein step c) is carried out by an automated peak picking routine.

6. The method of claim 1 , wherein the peak positions in the N-dimensional spectrum in step d6) is an arithmetic average of w intersections of subspaces, arising from x selected peaks from the corresponding subgroup, wherein w≧1.

7. A method of projection spectroscopy data recording for N-dimensional nuclear magnetic resonance (NMR) experiments, the method comprising the steps of:

a) selecting-dimensional NMR experiments out of a group of N-dimensional experiments, selecting dimensionalities (D i ) of projections, and unconstrained selecting of j sets of projection angles, wherein j≧2;

b) recording discrete sets of j projections from the N-dimensional NMR experiments at the selected projection angles:

c) peak picking and creating a peak list for each of the j projection spectra;

d) automatically identifying peaks in the projection spectra that arise from a same resonance in the N-dimensional spectrum (N≧3) using vector algebra to exploit geometrical properties of projections in N-dimensional space and computing an N-dimensional peak list using vector algebra to exploit geometrical properties of the projections in the N-dimensional space, thereby determining resonance positions in N-dimensional frequency space; and

e) storing the peak list of step d), wherein step d) is run simultaneously with step b) and/or step c), allowing step d) to influence data recording and to stop measurement when the N-dimensional peak list is determined.

8. The method of claim 1 , wherein the N-dimensional peak list of step d) is used for automated sequence specific resonance assignments.

9. The method of claim 1 , wherein the resulting N-dimensional peak list of step d) is used for automated structure determination.

Assignments (3)
CHANGE OF NAME Recorded Oct 25, 2019
From: BRUKER BIOSPIN AG
To: BRUKER SWITZERLAND AG
Reel/Frame 050832/0040 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 10, 2007
From: FIORITO, FRANCESCO
To: BRUKER BIOSPIN AG
Reel/Frame 019170/0694 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 12, 2006
From: HILLER, SEBASTIAN; WIDER, GERHARD; WUTHRICH, KURT
To: BRUKER BIOSPIN AG
Reel/Frame 017922/0929 →
Priority Claims (1)
EP 05012094 · Jun 4, 2005 · regional
Continuity (1)
Related Publication 20060273797A1 · Dec 7, 2006