Mass defect triggered information dependent acquisition

1. A method for analyzing compounds in a sample, comprising the steps of:

(a) Determining a mass defect range;

(b) Emitting ions in a stream from the sample;

(c) Detecting the impact of the ions on a detector;

(d) Calculating the m/z for each detected ion;

(e) Determining if the m/z falls within the mass defect range; and

(f) Storing data corresponding to the m/z if the m/z falls within the mass defect range; and

(g) Selectively capturing at least one ion having a m/z which corresponds substantially to the stored m/z data, wherein the selectively capturing comprises selectively filtering the stream of emitted ions for ions having a m/z which corresponds substantially to the stored m/z data.

2. The method as claimed in claim 1 , further comprising the step of:

(h) Fragmenting the at least one captured ion and determining the m/z of at least one fragment of the at least one captured ion.

3. The method as claimed in claim 2 , further comprising the step of:

(i) Storing ion fragment m/z data corresponding to the m/z of the at least one fragment.

4. The method as claimed in claim 3 , further comprising the step of:

(j) generating a mass spectrum corresponding to the ion fragment m/z data.

5. A mass spectrometer comprising:

(a) an ion source for emitting a stream of ions from a sample;

(b) a detector positioned downstream of said ion source and configured to detect the impact of emitted ions on the detector;

(c) a controller operatively coupled to the detector and to the ion source and configured to calculate the m/z for each detected ion;

(d) wherein the controller comprises a mass defect filter configured to determine if the m/z for each detected ion falls within a pre-determined mass defect range;

(e) data storage coupled to the controller, wherein the data storage is configured to store detected ion m/z data corresponding to the m/z for a detected ion if the m/z falls within the mass defect range; and

(f) a selection and fragmentation module positioned downstream of said ion source and operatively coupled to the controller, wherein said selection and fragmentation module is configured to selectively capture at least one ion from the stream having a m/z which corresponds substantially to the stored detected ion m/z data.

6. The mass spectrometer as claimed in claim 5 , wherein said fragmentation module is configured to fragment each selected ion and to emit each fragment towards said detector.

7. The mass spectrometer as claimed in claim 5 , wherein the selection and fragmentation module comprises:

(i) an ion mass filter positioned downstream of said ion source and operatively coupled to the controller, wherein the ion mass filter is configured to selectively filter the stream for ions substantially corresponding to the stored detected ion m/z data.

8. A mass spectrometer as claimed in claim 7 , wherein the selection and fragmentation module comprises:

(ii) a fragmentor operatively coupled to the ion mass filter, wherein the fragmentor is configured to fragment each selected ion and to emit each fragment to said detector.

9. A mass spectrometer as claimed in claim 8 , wherein the controller is operatively coupled to the fragmentor and configured to calculated the m/z for each fragment detected by the detector.

10. The mass spectrometer as claimed in claim 9 , wherein the data storage is further configured to store fragment m/z data corresponding to the m/z for each detected fragment.

11. The mass spectrometer as claimed in claim 8 , wherein the fragmentor comprises a collision cell.

12. The mass spectrometer as claimed in claim 8 , wherein the fragmentor comprises resonance excitation.