IP Library Granted Patent US 7,919,519
Granted Patent B2
US 7,919,519 · App. 11/726,351 · Granted Apr 5, 2011

S1P receptor modulating compounds and use thereof

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Quick Facts
Patent No.
US 7,919,519
App. No.
11/726,351
Granted
Apr 5, 2011
Kind
B2
Abstract

The present invention relates to compounds of the general formula (I) that have activity as S1P receptor modulating agents and the use of such compounds to treat diseases associated with inappropriate S1P receptor activity. The compounds may be used as immunomodulators, e.g., for treating or preventing diseases such as autoimmune and related immune disorders including systemic lupus erythematosus, inflammatory bowel diseases such as Crohn's disease and ulcerative colitis, type I diabetes, uveitis, psoriasis, myasthenia gravis, rheumatoid arthritis, non-glomerular nephrosis, hepatitis, Behçet's disease, glomerulonephritis, chronic thrombocytopenic purpura, hemolytic anemia, hepatitis and Wegner's granuloma; and for treating other conditions.

Claims (51)

1. A compound having the formula

wherein

A is phenyl optionally substituted with one, two or three substituents selected from the group consisting of halogen, hydroxyl, SR 2 , S(O) 2 R 2 , S(O) 2 NR 2 , NHS(O) 2 R 2 , COR 2 , CO 2 R 2 , cyano, amino, C 1-5 alkylamino, arylamino, heteroarylamino, C 1-6 alkyl, C 1-5 alkylthio, C 1-5 alkoxy, halogen-substituted C 1-6 alkyl, and halogen-substituted C 1-5 alkoxy;

R 2 is selected from the group consisting of hydrogen, hydroxyl, amino, alkylamino, arylamino, C 1-6 alkyl, C 1-5 alkoxy, C 1-5 alkylthio, halogen-substituted C 1-6 alkyl, halogen-substituted C 1-5 alkoxy, aryl, and heteroaryl;

B and C are selected from the group consisting of

optionally substituted with 1 to 5 substituents selected from the group consisting of C 1-6 alkyl, C 1-5 alkylthio, C 1-5 alkoxy, halogen, hydroxyl, cyano, halogen-substituted C 1-6 alkyl and halogen-substituted C 1-5 alkoxy;

R 13 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 alkylthio, C 1-5 alkoxy, halogen, hydroxyl, cyano, halogen-substituted C 1-6 alkyl, and halogen-substituted C 1-5 alkoxy;

X is selected from the group consisting of WC(O)OR 6a , WP(O)R 6b R 6c , WS(O) 2 OH, WCONHSO 3 H and 1H-tetrazol-5-yl;

W is a direct bond, oxygen or C 1-4 alkyl having one or more substituents independently selected from the group consisting of halogen, hydroxyl, cyano, amino, alkylamino, arylamino, heteroarylamino groups, C 1-4 alkoxy and CO 2 H;

R 6a is hydrogen or C 1-4 alkyl;

R 6b and R 6c are independently hydrogen, hydroxyl, C 1-4 alkyl or halogen substituted C 1-4 alkyl;

Y is formula (a) where the left and right asterisks indicate the point of attachment

wherein

Q is selected from the group consisting of a direct bond, C═O, C═S, SO 2 , C═ONR and (CR 10 R 11 ) m ;

m is 0, 1, 2 or 3;

R 7 and R 8 are independently selected from the group consisting of hydrogen, halogen, amino, C 1-5 alkylamino, hydroxyl, cyano, C 1-6 alkyl, C 1-6 hydroxyalkyl (e.g., hydroxy-terminated alkyl), C 1-5 alkylthio, C 1-5 alkoxy, halogen-substituted C 1-6 alkyl and halogen-substituted C 1-5 alkoxy;

R 9 is selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, C 1-6 alkyl, C 1-5 alkylthio, C 1-5 alkoxy, halogen-substituted C 1-6 alkyl and halogen-substituted C 1-5 alkoxy;

R 10 and R 11 are independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, C 1-6 alkyl, C 1-5 alkoxy, C 1-5 alkylthio, halogen-substituted C 1-6 alkyl and halogen-substituted C 1-5 alkoxy;

Z 1 is independently selected from the group consisting of O, NR 3 , S, S(O), S(O) 2 NR 3 , (CR 4 R 5 ) n , C═O, C═S, C═N—R 3 , and a direct bond;

Z 2 is independently selected from the group consisting of O, NR 3 , S, S(O), S(O) 2 , S(O) 2 NR 3 , (CR 4 R 5 ) n , C═O, C═S, C═N—R 3 , and a direct bond;

R 3 is selected from the group consisting of hydrogen, hydroxyl, SO 2 , C═O, C═S, C═NH, C 1-6 alkyl, C 1-5 alkoxy, C 1-5 alkylthio, halogen-substituted C 1-6 alkyl and halogen-substituted C 1-5 alkoxy, aryl and heteroaryl, or when Z 2 is a direct bond, R 3 is a C 3 -C 6 ring optionally containing a heteroatom;

R 4 and R 5 are independently selected from the group consisting of hydrogen, halogen, hydroxyl, cyano, C 1-6 alkyl, C 1-5 alkoxy, C 1-5 alkylthio, halogen-substituted C 1-6 alkyl and halogen-substituted C 1-5 alkoxy, aryl and heteroaryl, or together form C═O;

n is 0, 1, 2 or 3; and

R 1 is selected from the group consisting of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-6 cycloalkyl, C 1-5 alkoxy, C 1-5 alkylamino, aryl, heteroaryl, and heterocycle, wherein the C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-6 cycloalkyl, C 1-5 alkoxy, C 1-5 alkylamino, aryl, and heteroaryl groups are optionally substituted with a substituent selected from the group consisting of hydroxyl, halogen, cyano, amino, alkylamino, aryl amino, and heteroarylamino, wherein the aryl and heteroaryl groups are optionally substituted with 1 to 5 substituents selected from the group consisting of hydroxyl, halogen, cyano, C 1-6 alkyl, C 1-5 alkylthio, C 1-5 alkoxy, and C 3-6 cycloalkyl, and wherein the heterocyclic groups are optionally substituted with one or more substituents selected from the group consisting of halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, alkylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylthiocarbonyl, alkoxy, phosphate, phosphonato, phosphinato, cyano, amino, acylamino, amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, azido, heterocyclyl, aryl, and heteroaryl;

or a pharmaceutically acceptable salt thereof.

2. The compound of claim 1 , wherein A is substituted with one, two or three substituents selected from the group consisting of halogen, hydroxyl, SR 2 , S(O) 2 R 2 , S(O) 2 NR 2 , NHS(O) 2 R 2 , COR 2 , CO 2 R 2 , cyano, amino, C 1-5 alkylamino/arylamino/heteroarylamino, C 1-6 alkyl, C 1-5 alkylthio, C 1-5 alkoxy, halogen-substituted C 1-6 alkyl, and halogen-substituted C 1-5 alkoxy.

3. The compound of claim 1 , wherein the pharmaceutically acceptable salt is selected from the group consisting of hydrochloride, maleate, citrate, fumarate, succinate, tartarate, mesylate, sodium, potassium, magnesium, and calcium salts.

4. A compound having the formula

wherein

the benzofuranyl ring is optionally substituted with 1 to 5 substituents selected from the group consisting of C 1-6 alkyl, C 1-5 alkylthio, C 1-5 alkoxy, halogen, hydroxyl, cyano, halogen-substituted C 1-6 alkyl and halogen-substituted C 1-5 alkoxy;

A is phenyl optionally substituted with one, two or three substituents selected from the group consisting of halogen, hydroxyl, SR 2 , S(O) 2 R 2 , S(O) 2 NR 2 , NHS(O) 2 R 2 , COR 2 , CO 2 R 2 , cyano, amino, C 1-5 alkylamino, arylamino, heteroarylamino, C 1-6 alkyl, C 1-5 alkylthio, C 1-5 alkoxy, halogen-substituted C 1-6 alkyl, and halogen-substituted C 1-5 alkoxy;

R 2 is selected from the group consisting of hydrogen, hydroxyl, amino, alkylamino, arylamino, C 1-6 alkyl, C 1-5 alkoxy, C 1-5 alkylthio, halogen-substituted C 1-6 alkyl, halogen-substituted C 1-5 alkoxy, aryl and heteroaryl;

X is —C(O)OR 6a , where R 6a is hydrogen or C 1-4 alkyl;

Y is a residue of formula (a)

wherein

Q is (CR 10 R 11 ) m ;

m is 0, 1, 2, 3 or 4;

R 7 and R 8 are independently hydrogen, hydroxyl, or lower alkyl;

R 9 is selected from the group consisting of hydrogen, halogen, hydroxyl, and cyano;

Z 1 and Z 2 are independently O or (CR 4 R 5 ) n ;

R 4 and R 5 are independently hydrogen, halogen, hydroxyl, cyano, C 1-6 alkyl, or C 1-5 alkoxy;

n is 0, 1, 2 or 3;

R 4 is selected from the group consisting of C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-6 cycloalkyl, C 1-5 alkoxy, C 1-5 alkylamino, aryl heteroaryl, and heterocycle, wherein the C 1-6 alkyl, C 2-6 alkenyl, C 2-6 alkynyl, C 3-6 cycloalkyl, C 1-5 alkoxy, and C 1-5 alkylamino groups are optionally substituted with a substituent selected from the group consisting of hydroxyl, halogen, cyano, amino, alkylamino, arylamino, and heteroarylamino, wherein the aryl and heteroaryl groups are optionally substituted with one to five substituents selected from the group consisting of hydroxyl, halogen, cyano, C 1-6 alkyl, C 1-5 alkylthio, C 1-5 alkoxy, and C 3-6 cycloalkyl, and wherein the heterocyclic groups are optionally substituted with one or more substituents selected from the group consisting of halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, alkylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylthiocarbonyl, alkoxy, phosphate, phosphonato, phosphinato, cyano, amino, acylamino, amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, azido, heterocyclyl, aryl, and heteroaryl;

or a pharmaceutically acceptable salt thereof.

5. The compound of claim 4 , wherein A is substituted with one, two or three substituents selected from the group consisting of halogen, hydroxyl, SR 2 , S(O) 2 R 2 , S(O) 2 NR 2 , NHS(O) 2 R 2 , COR 2 , CO 2 R 2 , cyano, amino, C 1-5 alkylamino/arylamino/heteroarylamino, C 1-6 alkyl, C 1-5 alkylthio, C 1-5 alkoxy, halogen-substituted C 1-6 alkyl, and halogen-substituted C 1-5 alkoxy.

6. The compound of claim 4 , wherein the pharmaceutically acceptable salt is selected from the group consisting of hydrochloride, maleate, citrate, fumarate, succinate, tartarate, mesylate, sodium, potassium, magnesium, and calcium salts.

7. A pharmaceutical composition comprising the compound of claim 1 in a therapeutically effective amount.

8. A compound or pharmaceutically acceptable salt or hydrate thereof, selected from the group consisting of:

3-(4-(5-Benzylbenzofuran-2-yl)-3-fluorobenzylamino)-2-methylpropanoic acid;

4-Amino-2-(4-(5-benzylbenzofuran-2-yl)-3-fluorobenzylamino)-4-oxobutanoic acid; and

4-Amino-3-(4-(5-benzylbenzofuran-2-yl)-3-fluorobenzylamino)-4-oxobutanoic acid.

Assignments (6)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 17, 2013
From: EPIX PHARMACEUTICALS, INC.
To: AMGEN INC.
Reel/Frame 029652/0342 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 23, 2010
From: EPIX DELAWARE INC.
To: EPIX PHARMACEUTICALS INC.
Reel/Frame 024119/0278 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 12, 2007
From: EPIX PHARMACEUTICALS, INC.
To: EPIX DELAWARE, INC.
Reel/Frame 019956/0363 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 27, 2007
From: AMGEN INC.
To: EPIX PHARMACEUTICALS, INC.
Reel/Frame 019747/0573 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 20, 2007
From: SAHA, ASHIS; SCHUTZ, NILI; YU, XIANG; MCCAULEY, DILARA; LOBERA, MERCEDES; MARANTZ, YAEL; LIN, JIAN; CHERUKU, SRINIVASA R.; ORBACH, PINI; SHARADENDU, ANURAG; PENLAND, ROBERT C.; GANNON, KIMBERLEY; SHACHAM, SHARON; NOIMAN, SILVIA; BECKER, OREN; ZHANG, ZHAODA
To: EPIX DELAWARE, INC.
Reel/Frame 019716/0701 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 27, 2007
From: BURLI, ROLAND; CEE, VICTOR J.; GOLDEN, JENNIFER; LANMAN, BRIAN ALAN; NEIRA, SUSANA
To: AMGEN INC.
Reel/Frame 019616/0348 →