IP Library Granted Patent US 8,124,368
Granted Patent B2
US 8,124,368 · App. 11/774,554 · Granted Feb 28, 2012

Fluorogenic protein kinase substrates

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Quick Facts
Patent No.
US 8,124,368
App. No.
11/774,554
Granted
Feb 28, 2012
Kind
B2
Abstract

The present invention relates to kinase sensors comprising a metal chelator and a fluorophore, where the chelator comprises a quinoline group and where the fluorophore is conjugated to the chelator. The invention also relates to methods of using these kinase sensors as well as kits comprising the kinase sensors.

Claims (53)

1. A kinase sensor comprising a metal chelator, a peptide and a fluorophore, wherein the chelator comprises a quinoline group and both the fluorophore and the peptide are conjugated to different positions on the quinoline group, and wherein the quinoline group chelates magnesium.

2. The kinase sensor of claim 1 , wherein the peptide comprises a kinase substrate.

3. The kinase sensor of claim 1 , wherein the quinoline group is substituted with a hydroxy group, an amino group, an amide group, a sulfonamide group or a thiol group.

4. The kinase sensor of claim 1 , wherein the fluorophore is selected from the group consisting of dansyl, xanthene, cyanine, borapolyazaindacene, pyrene, naphthalene, coumarin, oxazine, and derivatives thereof.

5. The kinase sensor of claim 4 , wherein the fluorophore is a coumarin, a xanthene or a derivative thereof.

6. The kinase sensor of claim 1 , wherein the peptide comprises a kinase recognition site and at least one amino acid residue selected from serine, threonine, or tyrosine that is subject to phosphorylation by the kinase.

7. A kinase sensor having the formula

wherein R 1 , is H, alkyl, substituted alkyl, alkoxy, substituted alkoxy, acyl, acylamino, acyloxy, amino, substituted amino, aminocarbonyl, aminothiocarbonyl, aminocarbonylamino, aminothiocarbonylamino, aminocarbonyloxy, aminosulfonyl, aminosulfonyloxy, aminosulfonylamino, amidino, carboxyl, carboxyl ester, (carboxyl ester)amino, (carboxyl ester)oxy, cyano, halo, hydroxy, nitro, SO 3 H, sulfonyl, substituted sulfonyl, sulfonyloxy, thioacyl, thiol, alkylthio, substituted alkylthio, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, or substituted heterocyclyl;

R 2 is a fluorophore, H, alkyl, substituted alkyl, alkoxy, substituted alkoxy, acyl, acylamino, acyloxy, amino, substituted amino, aminocarbonyl, aminothiocarbonyl, aminocarbonylamino, aminothiocarbonylamino, aminocarbonyloxy, aminosulfonyl, aminosulfonyloxy, aminosulfonylamino, amidino, carboxyl, carboxyl ester, (carboxyl ester)amino, (carboxyl ester)oxy, cyano, halo, hydroxy, nitro, SO 3 H, sulfonyl, substituted sulfonyl, sulfonyloxy, thioacyl, thiol, alkylthio, substituted alkylthio, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, or substituted heterocyclyl;

R 3 is a fluorophore, H, alkyl, substituted alkyl, alkoxy, substituted alkoxy, acyl, acylamino, acyloxy, amino, substituted amino, aminocarbonyl, aminothiocarbonyl, aminocarbonylamino, aminothiocarbonylamino, aminocarbonyloxy, aminosulfonyl, aminosulfonyloxy, aminosulfonylamino, amidino, carboxyl, carboxyl ester, (carboxyl ester)amino, (carboxyl ester)oxy, cyano, halo, hydroxy, nitro, SO 3 H, sulfonyl, substituted sulfonyl, sulfonyloxy, thioacyl, thiol, alkylthio, substituted alkylthio, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, or substituted heterocyclyl;

R 4 is a fluorophore, H, alkyl, substituted alkyl, alkoxy, substituted alkoxy, acyl, acylamino, acyloxy, amino, substituted amino, aminocarbonyl, aminothiocarbonyl, aminocarbonylamino, aminothiocarbonylamino, aminocarbonyloxy, aminosulfonyl, aminosulfonyloxy, aminosulfonylamino, amidino, carboxyl, carboxyl ester, (carboxyl ester)amino, (carboxyl ester)oxy, cyano, halo, hydroxy, nitro, SO 3 H, sulfonyl, substituted sulfonyl, sulfonyloxy, thioacyl, thiol, alkylthio, substituted alkylthio, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, or substituted heterocyclyl;

R 5 is a fluorophore, H, alkyl, substituted alkyl, alkoxy, substituted alkoxy, acyl, acylamino, acyloxy, amino, substituted amino, aminocarbonyl, aminothiocarbonyl, aminocarbonylamino, aminothiocarbonylamino, aminocarbonyloxy, aminosulfonyl, aminosulfonyloxy, aminosulfonylamino, amidino, carboxyl, carboxyl ester, (carboxyl ester)amino, (carboxyl ester)oxy, cyano, halo, hydroxy, nitro, SO 3 H, sulfonyl, substituted sulfonyl, sulfonyloxy, thioacyl, thiol, alkylthio, substituted alkylthio, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, or substituted heterocyclyl; and

R 6 is a fluorophore, H, alkyl, substituted alkyl, alkoxy, substituted alkoxy, acyl, acylamino, acyloxy, amino, substituted amino, aminocarbonyl, aminothiocarbonyl, aminocarbonylamino, aminothiocarbonylamino, aminocarbonyloxy, aminosulfonyl, aminosulfonyloxy, aminosulfonylamino, amidino, carboxyl, carboxyl ester, (carboxyl ester)amino, (carboxyl ester)oxy, cyano, halo, hydroxy, nitro, SO 3 H, sulfonyl, substituted sulfonyl, sulfonyloxy, thioacyl, thiol, alkylthio, substituted alkylthio, aryl, substituted aryl, heteroaryl, substituted heteroaryl, cycloalkyl, substituted cycloalkyl, heterocyclyl, or substituted heterocyclyl;

wherein at least one of R 2 , R 3 , R 4 , R 5 and R 6 is a fluorophore;

R 7 is H, alkyl, substituted alkyl, carbonyl, peptide or a protecting group; and

R 8 is H, alkyl, substituted alkyl, carbonyl, peptide or a protecting group;

L is a linker; and

Y is a peptide or H;

wherein at least one of R 7 , R 8 and Y is a peptide;

n is 1-5;

or a tautomer, stereoisomer, or salt thereof.

8. The kinase sensor of claim 7 , wherein R 4 is a fluorophore.

9. The kinase sensor of claim 7 , wherein the fluorophore is dansyl, xanthene, cyanine, borapolyazaindacene, pyrene, naphthalene, coumarin, oxazine, or derivatives thereof.

10. The kinase sensor of claim 7 , wherein the fluorophore is a coumarin, a xanthene or a derivative thereof.

11. The kinase sensor of claim 7 , wherein the fluorophore is:

wherein R 9 and R 10 are each independently a halogen, —SO 3 H, substituted sulfonyl, or H.

12. The kinase sensor of claim 7 , wherein L is a covalent bond.

13. The kinase sensor of claim 7 , wherein Y is H.

14. The kinase sensor of claim 7 , wherein R 1 is hydroxy.

15. The kinase sensor of claim 7 , wherein R 2 , R 3 , R 5 and R 6 are all H.

16. The kinase sensor of claim 7 , wherein R 7 is H or 9-fluorenylmethoxycarbonyl (FMOC).

17. The kinase sensor of claim 7 , wherein R 8 is H.

18. The kinase sensor of claim 7 , wherein Y is a peptide.

19. The kinase sensor of claim 7 , wherein the peptide comprises a kinase recognition site and at least one amino acid residue selected from serine, threonine, or tyrosine that is subject to phosphorylation by a kinase.

20. The kinase sensor of claim 7 , wherein the position indicated with a  bond is in the S configuration.

21. A salt of the kinase sensor of claim 7 , wherein the cation of the salt is magnesium.

22. A kit comprising a kinase sensor of claim 7 .

23. A kinase sensor having the formula

wherein R 7 is H, or a protecting group;

R 9 is a halogen, —SO 3 H, substituted sulfonyl, or H;

R 10 is a halogen, —SO 3 H, substituted sulfonyl, or H;

L is a linker; and

Y is a peptide;

or a tautomer, stereoisomer, or salt thereof.

24. The kinase sensor of claim 23 , wherein L is a covalent bond.

25. The kinase sensor of claim 23 , wherein R 9 and R 10 are both fluorine.

26. The kinase sensor of claim 23 , wherein R 7 is H.

27. A kit comprising a kinase sensor of claim 23 .

28. The kinase sensor of claim 23 , wherein the peptide comprises a kinase recognition site and at least one amino acid residue selected from serine, threonine, or tyrosine that is subject to phosphorylation by a kinase.

29. A kit comprising:

a kinase sensor comprising a metal chelator, a peptide and a fluorophore, wherein the chelator comprises a quinoline group and both the fluorophore and the peptide are conjugated to different positions on the quinoline group, wherein the quinoline group chelates magnesium, and wherein the peptide comprises a kinase recognition site and a phosphorylation site.

30. The kit of claim 29 , wherein the the fluorophore is selected from the group consisting of dansyl, xanthene, cyanine, borapolyazaindacene, pyrene, naphthalene, coumarin, oxazine, and derivatives thereof.

31. The kit of claim 29 , wherein the quinoline group is substituted with a hydroxy group, an amino group, an amide group, a sulfonamide group or a thiol group.

Assignments (5)
CORRECTIVE ASSIGNMENT TO CORRECT THE APPLICATION NO 09452626 PREVIOUSLY RECORDED ON REEL 023882 FRAME 0551. ASSIGNOR(S) HEREBY CONFIRMS THE MERGER SHOULD NOT HAVE BEEN RECORDED AGAINST THIS PATENT APPLICATION NUMBER. Recorded Nov 14, 2014
From: INVITROGEN CORPORATION
To: LIFE TECHNOLOGIES CORPORATION
Reel/Frame 034217/0490 →
LIEN RELEASE Recorded Apr 9, 2013
From: BANK OF AMERICA, N.A.
To: LIFE TECHNOLOGIES CORPORATION
Reel/Frame 030182/0461 →
MERGER Recorded Feb 3, 2010
From: INVITROGEN CORPORATION
To: LIFE TECHNOLOGIES CORPORATION
Reel/Frame 023882/0551 →
SECURITY AGREEMENT Recorded Dec 5, 2008
From: LIFE TECHNOLOGIES CORPORATION
To: BANK OF AMERICA, N.A., AS COLLATERAL AGENT
Reel/Frame 021975/0467 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 19, 2007
From: GEE, KYLE
To: INVITROGEN CORPORATION
Reel/Frame 019578/0234 →