Fluorescent light tomography
View Patent ↗Described herein are systems and methods for obtaining a three-dimensional (3D) representation of the distribution of fluorescent probes inside a sample, such as a mammal. Using a) fluorescent light emission data from one or more images, b) a surface representation of the mammal, and c) computer-implemented photon propagation models, the systems and methods produce a 3D representation of the fluorescent probe distribution in the mammal. The distribution may indicate—in 3D—the location, size, and/or brightness or concentration of one or more fluorescent probes in the mammal.
1. A method for obtaining a light distribution located inside an animal, the method comprising:
obtaining one or more fluorescent images of at least a portion of the animal;
obtaining a three dimensional representation of a surface portion of the animal;
dividing the three dimensional surface representation into a set of surface elements;
mapping fluorescent image data from the one or more fluorescent images to the set of surface elements to create fluorescent light emission data from the set of surface elements;
creating a set of volume elements within the animal;
converting the fluorescent light emission data from the set of surface elements into photon density internal to the animal using the set of surface elements and the set of volume elements; and
determining a three-dimensional representation of a fluorescent probe distribution internal to the animal with a processor using the photon density internal to the animal and the set of volume elements.
2. The method of claim 1 wherein obtaining the one or more fluorescent images includes capturing an image of the animal with a camera while the animal rests on a horizontal surface.
3. The method of claim 2 further comprising providing fluorescent excitation light onto the animal.
4. The method of claim 3 wherein the fluorescent excitation light is incident in an epi-illumination mode or a trans-illumination mode.
5. The method of claim 1 wherein a first fluorescent image includes a first position for an excitation light source and a second fluorescent image includes a second position for the excitation light source.
6. The method of claim 5 wherein the first position for the excitation light source includes a first trans-illumination position and the second position for the excitation light source includes a second trans-illumination position.
7. The method of claim 6 wherein a camera that captures the images does not move between image capture of the first fluorescent image and image capture of the second fluorescent image.
8. The method of claim 7 wherein the first fluorescent image is captured from one camera perspective relative to the animal and the second fluorescent image is captured from a second camera perspective relative to the animal.
9. The method of claim 5 wherein the first fluorescent image is captured at a first combination of excitation and emission wavelengths and the second fluorescent image is captured at a second combination of excitation and emission wavelengths.
10. The method of claim 1 further comprising:
dividing the surface portion into a set of surface elements;
dividing an interior of the animal into a set of volume elements; and
establishing a relationship between the set of surface elements and the set of volume elements.
11. The method of claim 1 wherein tissue in the animal is modeled as homogeneous in an excitation light propagation model.
12. The method of claim 1 further comprising determining autofluoresence data in the animal.
13. The method of claim 12 wherein the autofluoresence data determination includes forward modeling a tissue autofluoresence contribution to photon density at the surface portion.
14. The method of claim 13 further comprising altering the fluorescent light emission data with the autofluorescence data.
15. A method for obtaining a light distribution located inside an animal, the method comprising:
obtaining one or more fluorescent images of at least a portion of the animal;
obtaining a three dimensional representation of a surface portion of the animal;
dividing the three dimensional surface representation into a set of surface elements;
mapping fluorescent image data from the one or more fluorescent images to the set of surface elements to create fluorescent light emission data from the set of surface elements;
creating a set of volume elements within the animal;
converting the fluorescent light emission data from the set of surface elements into photon density internal to the animal using the set of surface elements and the set of volume elements;
determining a three-dimensional representation of a fluorescent probe distribution internal to the animal with a processor using the photon density internal to the animal and the set of volume elements; and
determining autofluoresence data in the animal,
wherein tissue in the animal is modeled as homogeneous in an excitation light propagation model.
16. The method of claim 15 wherein the autofluoresence data determination includes forward modeling a tissue autofluoresence contribution to photon density at the surface portion.
17. The method of claim 16 further comprising altering the fluorescent light emission data with the autofluorescence data.
18. The method of claim 15 further comprising:
dividing the surface portion into a set of surface elements;
dividing an interior of the animal into a set of volume elements; and
establishing a relationship between the set of surface elements and the set of volume elements.
19. The method of claim 15 wherein obtaining the one or more fluorescent images includes capturing an image of the animal with a camera while the animal rests on a horizontal surface.
20. A program storage device readable by a machine tangibly embodying a program of instructions executable by the machine to perform a method for obtaining a light distribution located inside an animal, the method comprising:
obtaining one or more fluorescent images of at least a portion of the animal;
obtaining a three dimensional representation of a surface portion of the animal;
dividing the three dimensional surface representation into a set of surface elements;
mapping fluorescent image data from the one or more fluorescent images to the set of surface elements to create fluorescent light emission data from the set of surface elements;
creating a set of volume elements within the animal;
converting the fluorescent light emission data from the set of surface elements into photon density internal to the animal using the set of surface elements and the set of volume elements; and
determining a three-dimensional representation of a fluorescent probe distribution internal to the animal using the photon density internal to the animal and the set of volume elements.