TEST AND MODEL FOR INFLAMMATORY DISEASE
The present invention relates to a means and methods for determining susceptibility to SEEK1 mediated diseases, such as psoriasis. In addition, there is provided polynucleotides encoding the SEEK1 protein having one or more nucleotide insertions, deletions or substitutions at one or novel positions, and the SEEK1 protein having one or more amino acid insertions, deletions and substitutions. Host cells and transgenics non-human animals comprising polynucleotides or proteins of the invention are also provided. Methods of screening for agents for use in treating SEEK1 mediated disease are also provided.
1 . A method of diagnosing or determining susceptibility to, an inflammatory disease, the method comprising:
identifying a human subject in need of being diagnosed with or determining susceptibility to the inflammatory disease, wherein the inflammatory disease is a SEEK1-mediated disease of the skin;
comparing a portion of a SEEK1 gene or protein of the subject with a SEEK1 gene of SEQ ID NO: 4 or SEEK1 protein of SEQ ID NO:5; and
determining the presence of one or more polymorphisms in the SEEK1 gene or protein of the subject.
2 . A method according to claim 1 , comprising determining the presence of a nucleotide substitution, deletion or insertion at any one or more of positions 51814, 51789, 51759, 51570, 51505, 51462, 51265, 51216, 51124, 51078, 51017, 51008, 50920, 50901, 50801, 50049, 49405-49407, 49160, 49133, 49045, 49038, 49017, 48920, 48773, 47938, 47868, 47852, 47826, 47661, 47645, 47567, 47547, 47508, 47507, 47438, 46831, 46806, 46784, 39881, 39880, 39851, 39725, 39722, 39702, 35884, 35732, 27006, 26915, 26770, 26724, 26694, 26684, 26675-26682, 26576, 26539, 25534, 25478 and 25449 of the SEEK1 gene of SEQ ID NO:4.
3 . A method according to claim 1 , said method comprising determining the presence of an amino acid substitution, deletion or insertion at one or more of positions 24, 34, 37, 40 or 133 of the SEEK1 amino acid sequence of SEQ ID NO:5 or the presence of a SEEK1 protein fragment of SEQ ID NO:6 or SEQ ID NO:7.
4 . A method of claim 1 , wherein the inflammatory disease is psoriasis.
5 . A method of diagnosing psoriasis in a human subject, or determining the susceptibility of a human subject to psoriasis as in claim 4 , the method comprising:
comparing a portion of the SEEK1 gene of the subject with the SEEK1 gene of SEQ ID No. 4; and
determining the presence of a nucleotide substitution, deletion or insertion at one or more positions of the SEEK 1 gene of the subject corresponding to positions 50049, 49405-49407, 49133, 49045, 49038, 49017, 48920, 48773, 47938, 39880, 35732, and 25534 of the SEEK1 gene of SEQ ID No. 4.
6 . A method of diagnosing psoriasis in a human subject, or determining the susceptibility of a human subject to psoriasis as in claim 4 , the method comprising:
comparing a portion of the SEEK1 gene of the subject with the SEEK1 gene SEQ ID No. 4; and
determining the presence of a nucleotide substitution, deletion or insertion at one or more positions of the SEEK1 gene of the subject corresponding to positions 50049, 49405-49407, 49133, 49045, 49038, 49017, 48920, 48773, 47938, and 39880 of the SEEK1 gene of SEQ ID No. 4.
7 . A method of diagnosing psoriasis in a human subject, or determining the susceptibility of a human subject to psoriasis as in claim 4 , the method comprising:
comparing a portion of the SEEK1 gene of the subject with the SEEK1 gene of SEQ ID No. 4; and
determining the presence of a nucleotide substitution, deletion or insertion at one or more positions of the SEEK1 gene of the subject corresponding to positions 50049, 49405-49407, 49133, 49045, 49038, 49017, 48920, 48773, and 47938 of the SEEK1 gene of SEQ ID No. 4.
8 . A method of diagnosing psoriasis is a human subject, or determining the susceptibility of a human subject to psoriasis as in claim 4 , the method comprising:
comparing a portion of the SEEK1 gene of the subject with the SEEK1 gene of SEQ ID No. 4; and
determining the presence of a nucleotide substitution, deletion or insertion at one or more positions of the SEEK1 gene of the subject corresponding to positions 49017, 48920, and 48773 of the SEEK1 gene of SEQ ID No. 4.
9 . A method of diagnosing psoriasis in a human subject, or determining the susceptibility of a human subject to psoriasis, the method comprising:
comparing a portion of a SEEK1 gene of the subject with a SEEK1 gene of SEQ ID No. 4; and
determining the presence of a nucleotide substitution, deletion or insertion at one or more positions of the SEEK 1 gene of the subject corresponding to positions 50049, 49405-49407, 49133, 49045, 49038, 49017, 48920, 48773, 47938, 39880, 35732, and 25534 of the SEEK1 gene of SEQ ID No. 4.
10 . A method of diagnosing psoriasis in a human subject, or determining the susceptibility of a human subject to psoriasis as in claim 9 , wherein the nucleotide substitution, deletion or insertion is at one or more positions of the SEEK1 gene of the subject corresponding to positions 50049, 49405-49407, 49133, 49045, 49038, 49017, 48920, 48773, 47938, and 39880 of the SEEK1 gene of SEQ ID No. 4.
11 . A method of diagnosing psoriasis in a human subject, or determining the susceptibility of a human subject to psoriasis as in claim 10 , wherein the nucleotide substitution, deletion or insertion is at one or more positions of the SEEK1 gene of the subject corresponding to positions 50049, 49405-49407, 49133, 49045, 49038, 49017, 48920, 48773, and 47938 of the SEEK1 gene of SEQ ID No. 4.
12 . A method of diagnosing psoriasis is a human subject, or determining the susceptibility of a human subject to psoriasis as in claim 11 , wherein the nucleotide substitution, deletion or insertion is at one or more positions of the SEEK1 gene of the subject corresponding to positions 49017, 48920, and 48773 of the SEEK1 gene of SEQ ID No. 4.
13 . A kit for use in a method of claim 9 , comprising one or more agents for detecting a nucleotide substitution, deletion or insertion in a SEEK1 gene of a human subject as positions corresponding to one or more of positions 50049, 49405-49407, 49133, 49045, 49038, 49017, 48920, 48773, 47938, 39880, 35732, and 25534 of the SEEK1 gene of SEQ ID No. 4, in a portion of the subject's SEEK1 gene.
14 . A kit as in claim 13 , wherein the one or more agents are for detecting a nucleotide substitution, deletion or insertion in a SEEK1 gene of a human subject as positions corresponding to one or more of positions 50049, 49405-49407, 49133, 49045, 49038, 49017, 48920, 48773, 47938, and 39880 of the SEEK1 gene of SEQ ID No. 4, in a portion of the subject's SEEK1 gene.
15 . A kit for use in a method of claim 14 , wherein the one or more agents are for detecting a nucleotide substitution, deletion or insertion in a SEEK1 gene of a human subject as positions corresponding to one or more of positions 50049, 49405-49407, 49133, 49045, 49038, 49017, 48920, 48773, and 47938 of the SEEK1 gene of SEQ ID No. 4, in a portion of the subject's SEEK1 gene.
16 . A kit for use in a method of claim 15 , wherein the one or more agents are for detecting a nucleotide substitution, deletion or insertion in a SEEK1 gene of a human subject as positions corresponding to one or more of positions 49017, 48920, and 48773 of the SEEK1 gene of SEQ ID No. 4, in a portion of the subject's SEEK1 gene.