IP Library Granted Patent US 8,093,246
Granted Patent B2
US 8,093,246 · App. 11/954,433 · Granted Jan 10, 2012

O-linked pyrimidin-4-amine-based compounds, compositions comprising them, and methods of their use to treat cancer

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Quick Facts
Patent No.
US 8,093,246
App. No.
11/954,433
Granted
Jan 10, 2012
Kind
B2
Abstract

O-linked pyrimidin-4-amine-based compounds, pharmaceutical compositions comprising them, and methods of their use are described. Particular compounds of the invention are of formula I:

Claims (55)

1. A compound of the formula:

or a pharmaceutically acceptable salt thereof, wherein:

L 1 is a bond, —C(O)—, —SO 2 —, or —C(R 4 ) 2—;

L 2 is a bond, —O—, —C(O)—, —SO 2 —, —C(NOH)—, or —C(R 5 ) 2—;

A 2 is optionally substituted cycloalkyl, aryl or heterocycle;

R 1 is hydrogen, halogen, —OH, —NH 2 , —NO 2 , —CN, —C(O)OR 4 , or optionally substituted alkyl;

R 2 is hydrogen, halogen, —OH, —NH 2 , —NO 2 , —CN, —C(O)OR 4 , or optionally substituted alkyl;

each R 3 is independently ═O or optionally substituted lower alkyl;

each R 4 is independently hydrogen or lower alkyl;

each R 5 is independently hydrogen, fluoro, hydroxyl or lower alkyl, provided that when one of R 5 is hydroxyl, the other is neither hydroxyl nor fluoro;

each R 6 is halogen, —OH, —NH 2 , —NO 2 , —CN, or optionally substituted alkyl;

m is 0-4; and

p is 0-2.

2. The compound of claim 1 , which is of the formula:

3. A compound of the formula:

or a pharmaceutically acceptable salt thereof, wherein:

L 1 is a bond, —C(O)—, —SO 2 —, or —C(R 4 ) 2 —;

L 2 is a bond, —O—, —C(O)—, —SO 2 —, —C(NOH)—, or —C(R 5 ) 2 —;

A 2 is optionally substituted cycloalkyl, aryl or heterocycle;

R 1 is hydrogen, halogen, —OH, —NH 2 , —NO 2 , —CN, —C(O)OR 4 , or optionally substituted alkyl;

R 2 is hydrogen, halogen, —OH, —NH 2 , —NO 2 , —CN, —C(O)OR 4 , or optionally substituted alkyl;

each R 3 is independently ═O or optionally substituted lower alkyl;

each R 4 is independently hydrogen or lower alkyl;

each R 5 is independently hydrogen, fluoro, hydroxyl or lower alkyl, provided that when one of R 5 is hydroxyl, the other is neither hydroxyl nor fluoro;

each R 6 is halogen, —OH, —NH 2 , —NO 2 , —CN, or optionally substituted alkyl;

m is 0-4; and

q is 0-4.

4. The compound of claim 1 or 3 , wherein A 2 is optionally substituted phenyl, pyridine, quinoline, thiophene, indole, pyrazole, piperidine, morpholine, or pyrrolidine.

5. The compound of claim 1 or 3 , wherein L 2 is —O—.

6. The compound of claim 1 or 3 , wherein L 2 is —C(O)— or —C(NOH)—.

7. The compound of claim 1 or 3 , wherein L 2 is —C(R 5 ) 2 —.

8. A compound of the formula:

or a pharmaceutically acceptable salt or solvate thereof, wherein:

L 2 is a bond, —O—, —C(O)—, —SO 2 —, —C(NOH)—, or —C(R 5 ) 2 —;

A 1 is optionally substituted cycloalkyl, aryl or heterocycle;

R 1 is hydrogen, halogen, —OH, —NH 2 , —NO 2 , —CN, —C(O)OR 4 , or optionally substituted alkyl;

R 2 is hydrogen, halogen, —OH, —NH 2 , —NO 2 , —CN, —C(O)OR 4 , or optionally substituted alkyl;

each R 3 is independently ═O or optionally substituted lower alkyl;

each R 4 is independently hydrogen or lower alkyl;

each R 5 is independently hydrogen, fluoro, hydroxyl or lower alkyl, provided that when one of R 5 is hydroxyl, the other is neither hydroxyl nor fluoro;

each R 7 is halogen, —OR 8 , —NH 2 , —NO 2 , —C(O)N(R 8 ) 2 , —CN, or optionally substituted alkyl, aryl or heterocycle;

each R 8 is hydrogen or optionally substituted alkyl;

n is 1-3;

m is 0-3 if n is 1, m is 0-4 if n is 2, or m is 0-5 if n is 3; and

r is 0-5.

9. The compound of claim 8 , wherein A 1 is optionally substituted imidazole, pyridine, pyrimidine, purine, triazine, or thiazole.

10. The compound of claim 8 , wherein R 7 is —OR 8 , C(O)N(R 8 ) 2 , or —CN.

11. The compound of claim 8 , wherein R 7 is an optionally substituted non-aromatic heterocycle.

12. The compound of claim 11 , wherein the heterocycle is hexahydropyrimidine, morpholine, piperidine, pyrrolidine, or 1,2,3,4-tetrahydropyrrolo[1,2-a]pyrimidine.

13. The compound of claim 8 , wherein L 2 is —O—.

14. The compound of claim 8 , wherein L 2 is —C(O)— or —C(NOH)—.

15. The compound of claim 8 , wherein L 2 is —C(R 5 ) 2 —.

16. The compound of claim 8 , wherein R 1 is halogen.

17. The compound of claim 8 , wherein R 2 is hydrogen.

18. A composition comprising a compound of claim 1 , 3 , or 8 and a pharmaceutically acceptable excipient or diluent.

Assignments (6)
RELEASE OF SECURITY INTEREST Recorded May 5, 2026
From: OXFORD FINANCE LLC
To: LEXICON PHARMACEUTICALS, INC.; LEXICON PHARMACEUTICALS
Reel/Frame 075545/0601 →
SECURITY INTEREST Recorded May 4, 2026
From: LEXICON PHARMACEUTICALS, INC.; LEXICON PHARMACEUTICALS (NEW JERSEY), INC.; LION ACQUISITION CORPORATION
To: HERCULES CAPITAL, INC., AS AGENT
Reel/Frame 075498/0899 →
SECURITY INTEREST Recorded Mar 17, 2022
From: LEXICON PHARMACEUTICALS, INC.
To: OXFORD FINANCE LLC, AS COLLATERAL AGENT
Reel/Frame 059432/0709 →
RELEASE OF SECURITY INTEREST Recorded Sep 14, 2020
From: BIOPHARMA CREDIT PLC
To: LEXICON PHARMACEUTICALS, INC.
Reel/Frame 053767/0445 →
SECURITY INTEREST Recorded Dec 20, 2017
From: LEXICON PHARMACEUTICALS, INC.
To: BIOPHARMA CREDIT PLC
Reel/Frame 044958/0377 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 15, 2008
From: AUGERI, DAVID J; CARLSEN, MARIANNE; CARSON, KENNETH G; FU, QINGHONG; HEALY, JASON P; JESSOP, THEODORE C; KEYES, PHILIP E; SHEN, MIN; TARVER, JAMES E; TAYLOR, JERRY ANDREW; XU, XIAOLIAN; HEIM-RIETHER, ALEXANDER
To: LEXICON PHARMACEUTICALS, INC.
Reel/Frame 020365/0198 →