Expression signature in peripheral blood for detection of aortic aneurysm
We hypothesized that gene expression patterns in peripheral blood cells may correlate with TAA disease status, and carried out a comprehensive gene expression survey on peripheral blood cells obtained from TAA patients and normal individuals. A distinct gene expression profile in peripheral blood cells can classify TAA patients from normal individuals. The genes provided by the present teachings define a set of diagnostic markers, thus providing a blood-based gene expression test to facilitate early detection of TAA disease. Methods of distinguishing ascending from descending TAA are also provided, as are methods of distinguishing familial from sporadic TAA.
1 . A method of diagnosing a human subject with TAA, the method comprising;
detecting a level of expression of a plurality of genes associated with TAA in a test sample from the human subject, wherein the test sample is blood; and,
comparing the level of expression of a plurality of genes in the test sample with a level of expression of a plurality of genes in a control sample, wherein the level of expression of the plurality of genes in the test sample differs from the level of expression of the plurality of genes in the control sample when the subject is afflicted with TAA.
2 . The method according to claim 1 wherein the plurality of genes associated with TAA is the forty-one genes in FIG. 9 .
3 . The method according to claim 1 wherein the prediction accuracy is greater than 70 percent.
4 . The method according to claim 1 wherein the detecting comprises a multiplexed PCR, followed by a plurality of lower-plex PCRs.
5 . The method according to claim 1 wherein the detecting comprises hybridization to an array.
6 . The method according to claim 1 further comprising a surgical treatment.
7 . A method of distinguishing ascending thoracic aortic aneurysm from descending thoracic aortic aneurysm comprising;
detecting a level of expression of a plurality of genes associated with TAA in a test sample from the human subject, wherein the test sample is blood; and,
comparing the level of expression of a plurality of genes in the test sample with a level of expression of a plurality of genes in a control sample, wherein the level of expression of the plurality of genes in the test sample differs from the level of expression of the plurality of genes in the control sample when the subject is afflicted with an ascending aortic aneurysm, wherein the plurality of genes in the test sample are overexpressed in the ascending aortic aneurysm as compared with the control sample.
8 . The method according to claim 7 wherein the plurality of genes associated with TAA is the one-hundred and forty-four genes in FIG. 9 .
9 . The method according to claim 7 wherein the detecting comprises a multiplexed PCR, followed by a plurality of lower-plex PCRs.
10 . The method according to claim 7 wherein the detecting comprises hybridization to an array.
11 . The method according to claim 7 further comprising a surgical treatment.
12 . A method of distinguishing sporadic thoracic aortic aneurysm from familial thoracic aortic aneurysm comprising;
detecting a level of expression of a plurality of genes associated with TAA in a test sample from the human subject, wherein the test sample is blood; and,
comparing the level of expression of a plurality of genes in the test sample with a level of expression of a plurality of genes in a control sample, wherein the level of expression of the plurality of genes in the test sample differs from the level of expression of the plurality of genes in the control sample when the thoracic aortic aneurysm is sporadic, wherein the plurality of genes in the test sample are overexpressed in the test sample as compared with the control sample.
13 . The method according to claim 12 wherein the plurality of genes upregulated in the test sample is the 113 genes in FIG. 8 .
14 . The method according to claim 12 wherein the detecting comprises a multiplexed PCR, followed by a plurality of lower-plex PCRs.
15 . The method according to claim 12 wherein the detecting comprises hybridization to an array.
16 . The method according to claim 14 further comprising a surgical treatment.