Bi-dentate compounds as kinase inhibitors
The present invention provides compound having the general structure A or pharmaceutically acceptable salts thereof: Het-L-P (A) wherein Het is an aromatic moiety comprising a heterocyclic structure mimicking ATP, P is a docking site derived peptide or a docking site peptide mimetic, and L is a linking moiety, wherein L links the ATP mimetic to the docking site peptide moiety. The compounds having the general structure A can serve as inhibitors of kinases, such as the kinases JNK, Erk and p38.
1. A compound having the general structure A or a pharmaceutically acceptable salt thereof:
Het-L-P (A)
wherein:
R is phenylene;
R 1 is hydrogen, straight-chained alkyl, branched alkyl, halogen, nitro or NHC(O)CH 2 C 4 H 3 S;
P is a peptide consisting of the sequence selected from the group consisting of RPTTLNLGG (SEQ ID NO:1), PTTLNLGG (SEQ ID NO:2), LNLGG (SEQ ID NO:3), RPTTLNL (SEQ ID NO:4), GRKKRRGRRRGGRPTTLNLGG (SEQ ID NO:5), GGLNLTTPRGGRRRQRRKKRG (SEQ ID NO:6, (D amino acids)), GRPTTLNLGG (SEQ ID NO:7); Xaa (0-8) LNLGGXaa (0-8) (SEQ ID NO:8), PTTLNL (SEQ ID NO:10), GGLNLTTPR (SEQ ID NO:11), GGLNLTTP (SEQ ID NO:12), GGLNL (SEQ ID NO:13), LNLTTPR (SEQ ID NO:14), LNLTTP (SEQ ID NO: 15), LNL, N-myristoilated RPTTLNLGG (SEQ ID NO:1), N-myristoilated PTTLNLGG (SEQ ID NO:2), N-myristoilated LNLGG (SEQ ID NO:3), N-myristoilated RPTTLNL (SEQ ID NO:4), N-myristoilated PTTLNL (SEQ ID NO:10), N-myristoilated LNL, C-myristoilated GGLNLTTPR (SEQ ID NO:11), C-myristoilated GGLNLTTP (SEQ ID NO:12), C-myristoilated GGLNL (SEQ ID NO:13), C-myristoilated LNLTTPR (SEQ ID NO:14), C-myristoilated LNLTTP (SEQ ID NO:15) and C-myristoilated LNL, and L is a linking moiety selected from the group consisting of: (a) structure II:
(b) —(CH 2 ) n —, (c) —O—(CH 2 ) n —O—, (d) —(CH 2 )-phenylene-, and (e) —NHSO 2 —(CH 2 ) n —CONH—, wherein n is an integer having a value between 2 and 8, and
wherein Het is connected to the linking moiety L via the phenylene substituent R, and wherein the linking moiety L links the phenylene substituent R to the peptide P.
2. The compound of claim 1 , wherein the peptide moiety binds to a JNK kinase docking site.
3. The compound of claim 2 , wherein the peptide consists of Xaa (0-8) LNLGGXaa (0-8) (SEQ ID NO:8).
4. The compound of claim 2 , wherein the peptide is an L optical isomer of a peptide consisting of the sequence selected from the group consisting of RPTTLNLGG (SEQ ID NO:1), PTTLNLGG (SEQ ID NO:2), LNLGG (SEQ ID NO:3), RPTTLNL (SEQ ID NO:4), PTTLNL (SEQ ID NO:10), LNL, and N-myristoilated sequences thereof.
5. The compound of claim 4 , wherein the peptide is N-myristoilated.
6. The compound of claim 2 , wherein the peptide is a D optical isomer of a any peptide consisting of the sequence selected from the group consisting of GGLNLTTPR (SEQ ID NO:11), GGLNLTTP (SEQ ID NO:12), GGLNL (SEQ ID NO:13), LNLTTPR (SEQ ID NO:14), LNLTTP (SEQ ID NO:15), and LNL, and C— myristoilated sequences thereof.
7. The compound of claim 6 , wherein the peptide is C-myristoilated.
8. The compound of claim 1 , wherein the linking moiety is structure II.
9. A compound selected from compounds I-VIII, wherein compounds I-VII comprise SEQ ID NO'S 1 to 7 and compound VIII comprises SEQ ID NO:1:
10. A pharmaceutical composition comprising a compound of claim 1 or claim 9 , and a pharmaceutically acceptable carrier thereof.
11. The composition of claim 9 , further comprising an additional compound selected from:
(1) an estrogen receptor modulator,
(2) an androgen receptor modulator,
(3) retinoid receptor modulator,
(4) a cytotoxic agent,
(5) an antiproliferative agent,
(6) a prenyl-protein transferase inhibitor,
(7) an HMG-CoA reductase inhibitor,
(8) an HIV protease inhibitor,
(9) a reverse transcriptase inhibitor,
(10) an angiogenesis inhibitor, and
(11) a PPAR-gamma agonist.
12. The composition of claim 11 , wherein the additional compound is an angiogenesis inhibitor selected from a tyrosine kinase inhibitor, an inhibitor of epidermal-derived growth factor, an inhibitor of fibroblast-derived growth factor, an inhibitor of platelet derived growth factor, an MMP inhibitor, an integrin blocker, interferon-.alpha., interleukin-12, pentosan polysulfate, a cyclooxygenase inhibitor, carboxyamidotriazole, combretastatin A-4, squalamine, 6-O-(chloroacetyl-carbonyl)-fumagillol, thalidomide, angiostatin, troponin-1, and an antibody to VEGF.
13. The composition of claim 11 , wherein the additional compound is an estrogen receptor modulator selected from tamoxifen and raloxifene.
14. The composition of claim 11 , further comprising a steroidal anti-inflammatory compound.
15. The composition of claim 11 , further comprising an anti-hypertensive compound.
16. A method of treating retinal vascularization, comprising administering to a subject a therapeutically effective amount of a composition of claim 10 .
17. A method of treating diabetic retinopathy, comprising administering to a subject a therapeutically effective amount of a composition of claim 10 .
18. A kit comprising a packaging material and the pharmaceutical composition of claim 10 contained within the packaging material, wherein the packaging material comprises a label which indicates that the composition can be used for treating a disorder, disease, or pathology in a subject in need thereof.