System and method for unsupervised detection and gleason grading of prostate cancer whole mounts using NIR fluorscence
View Patent ↗A method for unsupervised classification of histological images of prostatic tissue includes providing histological image data obtained from a slide simultaneously co-stained with NIR fluorescent and Hematoxylin-and-Eosin (H&E) stains, segmenting prostate gland units in the image data, forming feature vectors by computing discriminating attributes of the segmented gland units, and using the feature vectors to train a multi-class classifier, where the classifier classifies prostatic tissue into benign, prostatic intraepithelial neoplasia (PIN), and Gleason scale adenocarcinoma grades 1 to 5 categories.
1. A method for unsupervised classification of histological images of prostatic tissue, comprising the steps of:
providing histological image data obtained from a slide simultaneously co-stained with NIR fluorescent and Hematoxylin-and-Eosin (H&E) stains;
segmenting prostate gland units in the image data;
forming feature vectors by computing discriminating attributes of the segmented gland units; and
using said feature vectors to train a multi-class classifier within a Bayesian framework, wherein said classifier is arranged to classify prostatic tissue into benign, prostatic intraepithelial neoplasia (PIN), and Gleason scale adenocarcinoma grades 1 to 5 categories and to use Bayesian posterior probabilities to determine a strength of a diagnosis, wherein a borderline prognosis between two categories is provided to a second phase classifier using a classification model whose parameters are tuned to the two categories of the borderline prognosis.
2. The method of claim 1 , wherein said classifier is trained to detect a most prominent and a second most prominent pattern in said image data, and to compute a Gleason score as a sum of Gleason grades of said patterns.
3. The method of claim 1 , wherein said classifier is trained using a multi-class support vector machine using a probabilistic interpretation of the classifier output.
4. The method of claim 1 , wherein said classifier is trained using a multi-class boosting algorithm using a probabilistic interpretation of the classifier output.
5. The method of claim 1 , wherein said slide is co-stained with an AMACR biomarker.
6. The method of claim 1 , wherein said discriminating attributes include boundary and region descriptors, structural descriptors, and texture descriptors.
7. A program storage device readable by a computer, tangibly embodying a program of instructions executable by the computer to perform the method steps for unsupervised classification of histological images of prostatic tissue, said method comprising the steps of:
providing histological image data obtained from a slide simultaneously co-stained with NIR fluorescent and Hematoxylin-and-Eosin (H&E) stains;
segmenting prostate gland units in the image data;
forming feature vectors by computing discriminating attributes of the segmented gland units; and
using said feature vectors to train a multi-class classifier within a Bayesian framework, wherein said classifier is arranged to classify prostatic tissue into benign, prostatic intraepithelial neoplasia (PIN), and Gleason scale adenocarcinoma grades 1 to 5 categories and to use Bayesian posterior probabilities to determine a strength of a diagnosis, wherein a borderline prognosis between two categories is provided to a second phase classifier using a classification model whose parameters are tuned to the two categories of the borderline prognosis.
8. The computer readable program storage device of claim 7 , wherein said classifier is trained to detect a most prominent and a second most prominent pattern in said image data, and to compute a Gleason score as a sum of Gleason grades of said patterns.
9. The computer readable program storage device of claim 7 , wherein said classifier is trained using a multi-class support vector machine using a probabilistic interpretation of the classifier output.
10. The computer readable program storage device of claim 7 , wherein said classifier is trained using a multi-class boosting algorithm using a probabilistic interpretation of the classifier output.
11. The computer readable program storage device of claim 7 , wherein said slide is co-stained with an AMACR biomarker.
12. The computer readable program storage device of claim 7 , wherein said discriminating attributes include boundary and region descriptors, structural descriptors, and texture descriptors.