IP Library Granted Patent US 8,263,754
Granted Patent B2
US 8,263,754 · App. 12/420,701 · Granted Sep 11, 2012

Amphiphiles for protein solubilization and stabilization

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Quick Facts
Patent No.
US 8,263,754
App. No.
12/420,701
Granted
Sep 11, 2012
Kind
B2
Abstract

The invention provides amphiphiles for manipulating membrane proteins. The amphiphiles can feature carbohydrate-derived hydrophilic groups and branchpoints in the hydrophilic moiety and/or in a lipophilic moiety. Such amphiphiles are useful as detergents for solubilization and stabilization of membrane proteins, including photosynthetic protein superassemblies obtained from bacterial membranes.

Claims (54)

1. An amphiphilic compound of Formula I:

wherein

each R is independently C 1 -C 16 straight or branched alkyl, C 3 -C 8 cycloalkyl, C 3 -C 8 cycloalkenyl, phenyl, biphenyl, or C 3 -C 8 cycloalkyl, C 3 -C 8 cycloalkenyl, phenyl, biphenyl substituted with one, two, or three C 1 -C 6 straight or branched alkyl groups; or

the two R groups together with the carbon to which they are attached form a C 3 -C 8 cycloalkyl, a C 3 -C 8 cycloalkenyl, or an adamantyl ring;

R 1 is C 1 -C 16 straight or branched alkyl, C 3 -C 8 cycloalkyl, C 3 -C 8 cycloalkenyl, phenyl, biphenyl, halophenyl, p-tolyl, adamantyl or C 3 -C 8 cycloalkyl, C 3 -C 8 cycloalkenyl, phenyl, biphenyl, halophenyl, p-tolyl, adamantyl substituted with one, two, or three C 1 -C 6 straight or branched alkyl groups; or

R, R, and R 1 together with the carbon to which they are attached form an adamantyl ring, optionally substituted with one, two, or three C 1 -C 6 straight or branched alkyl groups;

X is CH 2 or a direct bond;

R 2 is H, an O-linked C 6 glycosyl residue, or an O-linked oligosaccharide comprising two or more glycosyl residues;

R 3 is an O-linked C 6 glycosyl residue, or an O-linked oligosaccharide comprising two or more glycosyl residues, or a C 1 -C 4 alkyl-(N,N-dimethyl)N-oxide; and

R 4 is an O-linked C 6 glycosyl residue, an O-linked oligosaccharide comprising two or more glycosyl residues, or a C 1 -C 4 alkyl-(N,N-dimethyl)N-oxide.

2. The amphiphilic compound of claim 1 wherein each R is independently ethyl, n-propyl, n-butyl, n-pentyl, n-hexyl, n-heptyl, adamantyl, cyclopentyl, cyclohexyl, cycloheptyl, or cyclooctyl; and

R 1 is C 1 -C 16 n-alkyl, isobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, phenyl, halophenyl, p-tolyl, p-isopropyl phenyl, p-t-butylphenyl, or p-biphenyl.

3. The amphiphilic compound of claim 2 wherein each R is n-butyl and R 1 is phenyl; each R is n-butyl and R 1 is cyclohexyl; each R is n-butyl and R 1 is isobutyl; each R is n-butyl and R 1 is p-iodophenyl; each R is ethyl and R 1 is isobutyl; each R is n-butyl and R 1 is p-tolyl; each R is n-butyl and R 1 is p-isopropyl phenyl; each R is n-butyl and R 1 is p-t-butyl phenyl; each R is n-pentyl and R 1 is phenyl; or each R is n-hexyl and R 1 is phenyl.

4. The amphiphilic compound of claim 1 wherein the compound of Formula I is a compound of Formula II:

wherein R 5 is H or a C 6 glycosyl residue.

5. The amphiphilic compound of claim 1 wherein X is a direct bond and R 2 is H.

6. The amphiphilic compound of claim 5 wherein the compound of Formula I is a compound of Formula III:

wherein R 5 is H or a C 6 glycosyl residue.

7. The amphiphilic compound of claim 1 wherein one or both of R 3 and R 4 are O-linked glucose, mannose, galactose, maltose, or sucrose residues.

8. An amphiphilic compound of Formula IV:

wherein

one R is H and the other R is C 1 -C 16 straight or branched alkyl, C 3 -C 8 cycloalkyl, C 3 -C 8 cycloalkenyl, phenyl, biphenyl, or C 3 -C 8 cycloalkyl, C 3 -C 8 cycloalkenyl, phenyl, biphenyl substituted with one, two, or three C 1 -C 6 straight or branched alkyl groups; or

the two R groups together with the carbon to which they are attached form an adamantyl ring;

R 1 is C 1 -C 16 straight or branched alkyl, C 3 -C 8 cycloalkyl, C 3 -C 8 cycloalkenyl, phenyl, biphenyl, halophenyl, p-tolyl, adamantyl or C 3 -C 8 cycloalkyl, C 3 -C 8 cycloalkenyl, phenyl, biphenyl, halophenyl, p-tolyl, adamantyl substituted with one, two, or three C 1 -C 6 straight or branched alkyl groups; or

R, R, and R 1 together with the carbon to which they are attached form an adamantyl ring, optionally substituted with one, two, or three C 1 -C 6 straight or branched alkyl groups;

each X is independently CH 2 or a direct bond;

R 2 is H, an O-linked C 6 glycosyl residue, or an O-linked oligosaccharide comprising two glycosyl residues;

R 3 is H, an O-linked C 6 glycosyl residue, or an O-linked oligosaccharide comprising two glycosyl residues; and

R 4 is an O-linked C 6 glycosyl residue, or an O-linked oligosaccharide comprising two glycosyl residues.

9. The amphiphilic compound of claim 8 wherein each R is independently ethyl, n-propyl, n-butyl, n-pentyl, n-hexyl, n-heptyl, adamantyl, cyclopentyl, cyclohexyl, cycloheptyl, or cyclooctyl; and

R 1 is C 1 -C 16 n-alkyl, isobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, phenyl, halophenyl, p-tolyl, p-isopropyl phenyl, p-t-butylphenyl, or p-biphenyl.

10. An amphiphilic compound wherein the compound is:

11. The amphiphilic compound of claim 8 wherein the two R groups together with the carbon to which they are attached form an adamantyl ring; R 1 is a C 1 -C 16 straight or branched alkyl; —X—R 2 is direct bond-H; —X—R 3 is direct bond-H or —CH 2 —O-linked C 6 glycosyl residue or O-linked oligosaccharide comprising two glycosyl residues.

12. The amphiphilic compound of claim 11 wherein the compound is:

13. The amphiphilic compound of claim 8 wherein the compound of Formula IV is a compound of Formula V:

wherein R 5 is H or a C 6 glycosyl residue; and

each R 6 is independently H or C 1 -C 6 alkyl.

14. The amphiphilic compound of claim 13 wherein the compound is:

15. An amphiphilic compound of Formula VI:

wherein R is H, C 1 -C 16 straight or branched alkyl, C 3 -C 8 cycloalkyl, C 3 -C 8 cycloalkenyl, phenyl, biphenyl, or C 3 -C 8 cycloalkyl, C 3 -C 8 cycloalkenyl, phenyl, biphenyl substituted with one, two, or three C 1 -C 6 straight or branched alkyl groups;

each X is independently CH 2 or a direct bond;

R 2 is H, an O-linked C 6 glycosyl residue, or an O-linked oligosaccharide comprising two or more glycosyl residues;

R 3 is H, an O-linked C 6 glycosyl residue, or an O-linked oligosaccharide comprising two or more glycosyl residues, or a C 1 -C 4 alkyl-(N,N-dimethyl)N-oxide; and

R 4 is an O-linked C 6 glycosyl residue, an O-linked oligosaccharide comprising two or more glycosyl residues, or a C 1 -C 4 alkyl-(N,N-dimethyl)N-oxide.

16. The amphiphilic compound of claim 15 wherein R is a C 3 -C 10 branched alkyl.

17. The amphiphilic compound of claim 16 wherein —X—R 2 is direct bond-H; —X—R 3 is direct bond-H or —CH 2 —O-linked C 6 glycosyl residue or O-linked oligosaccharide comprising two or more glycosyl residues; and R 4 is O-linked C 6 glycosyl residue or O-linked oligosaccharide comprising two or more glycosyl residues, or a C 1 -C 4 alkyl-(N,N-dimethyl)N-oxide.

18. The amphiphilic compound of claim 17 wherein the compound is:

19. A method for solubilizing or stabilizing a membrane protein comprising contacting a protein in an aqueous environment with an effective amount of a compound of claim 1 , and

optionally heating the protein and the compound, to provide the solubilized protein encapsulated in micelles of the compound.

20. A method for solubilizing or stabilizing a membrane protein comprising contacting a protein in an aqueous environment with an effective amount of a compound of claim 8 , and

optionally heating the protein and the compound, to provide the solubilized protein encapsulated in micelles of the compound.

21. A method for solubilizing or stabilizing a membrane protein comprising contacting a protein in an aqueous environment with an effective amount of a compound of claim 15 , and

optionally heating the protein and the compound, to provide the solubilized protein encapsulated in micelles of the compound.

22. The amphiphilic compound of claim 1 wherein the compound is:

Assignments (5)
RELEASE OF SECURITY INTEREST Recorded Jul 17, 2017
From: OPUS BANK
To: ANATRACE PRODUCTS, LLC; EDGE BIOSYSTEMS, INC.
Reel/Frame 043026/0351 →
RELEASE OF SECURITY INTEREST Recorded Jul 17, 2017
From: FIDUS MEZZANINE CAPITAL, L.P.
To: ANATRACE PRODUCTS, LLC; EDGE BIOSYSTEMS, INC.
Reel/Frame 043026/0361 →
SECURITY INTEREST Recorded Dec 30, 2015
From: EDGE BIOSYSTEMS, INC.; ANATRACE PRODUCTS, LLC
To: FIDUS MEZZANINE CAPITAL, L.P.
Reel/Frame 037380/0659 →
PATENT SECURITY AGREEMENT Recorded Dec 29, 2015
From: EDGE BIOSYSTEMS, INC.; ANATRACE PRODUCTS, LLC
To: OPUS BANK
Reel/Frame 037396/0638 →
CONFIRMATORY LICENSE Recorded May 21, 2012
From: WISCONSIN ALUMNI RESEARCH FOUNDATION
To: ENERGY, UNITED STATES DEPARTMENT OF
Reel/Frame 028254/0942 →