IP Library Granted Patent US 8,476,285
Granted Patent B2
US 8,476,285 · App. 12/494,917 · Granted Jul 2, 2013

Purine-core inhibitors of HSP90 and their use in treating cancer

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Quick Facts
Patent No.
US 8,476,285
App. No.
12/494,917
Granted
Jul 2, 2013
Kind
B2
Abstract

The invention relates to compounds of Formulae I-III: and therapeutic uses thereof, wherein A is chosen from a substituted or unsubstituted aryl, heteroaryl, heterocyclic, or carbocyclic group; B is chosen from a substituted or unsubstituted piperidine, homopiperidine, piperazine, pyrrolidine or azetidine group; R1 is chosen from hydro, alkyl, aryl, heteroaryl, amino, or halo; and L 1 , L 2 , are as defined herein.

Claims (65)

1. A pharmaceutical composition comprising: a pharmaceutically acceptable carrier and an effective amount of a compound of Formula I, or a pharmaceutically acceptable salt thereof,

wherein:

A is chosen from a substituted or unsubstituted aryl, heteroaryl, heterocyclic, or carbocyclic group;

B is chosen from a substituted or unsubstituted piperidine, homopiperidine, piperazine, pyrrolidine or azetidine group;

R1 is chosen from hydro, alkyl, aryl, heteroaryl, amino, or halo;

L 1 can be saturated, partially saturated, or unsaturated, and is chosen from —(CH 2 ) n —(CH 2 ) n —, —(CH 2 ) n C(═O)(CH 2 ) n —, —(CH 2 ) n C(═O)NH(CH 2 ) n —, —(CH 2 ) n NHC(═O)O(CH 2 ) n —, —(CH 2 ) n NHC(═S)S(CH 2 ) n —, —(CH 2 ) n OC(═O)S(CH 2 ) n —, —(CH 2 ) n NH(CH 2 ) n —, —(CH 2 ) n O(CH 2 ) n —, —(CH 2 ) n S(CH 2 ) n —, or —(CH 2 ) n NHC(═S)NH(CH 2 ) n —, where each n

is independently chosen from 0, 1, 2, 3, 4, 5, 6, 7 or 8, and wherein each carbon and/or nitrogen can be optionally substituted with one or more substituents independently chosen from hydroxyl, halo, alkoxy, C 1-3 alkyl, or C 3-6 cycloalkyl;

L 2 can be saturated, partially saturated, or unsaturated, and is chosen from —(CH 2 ) n —(CH 2 ) n —, —(CH 2 ) n C(═O)(CH 2 ) n —, —(CH 2 ) n C(═O)NH(CH 2 ) n —, —(CH 2 ) n NHC(═O)O(CH 2 ) n —, —(CH 2 ) n NHC(═O)NH(CH 2 ) n —, —(CH 2 ) n NHC(═S)S(CH 2 ) n —, —(CH 2 ) n OC(═O)S(CH 2 ) n —, —(CH 2 ) n NH(CH 2 ) n —, —(CH 2 ) n O(CH 2 ) n —, —(CH 2 ) n S(CH 2 ) n —, or —(CH 2 ) n NHC(═S)NH(CH 2 ) n —, where each n is

independently chosen from 0, 1, 2, 3, 4, 5, 6, 7 or 8, and wherein each carbon and/or nitrogen can be optionally substituted with one or more substituents independently chosen from hydroxyl, halo, alkoxy, C 1-3 alkyl, or C 3-6 cycloalkyl.

2. The pharmaceutical composition of claim 1 , wherein

B is a substituted or unsubstituted piperidine group.

3. The pharmaceutical composition of claim 2 , wherein

B is a piperidine group substituted with one or more substituents chosen from hydro, halo, alkyl, alkoxy, haloalkyl, haloalkoxy, nitro, —CH 2 -aryl, —C(═O)alkyl, —C(═O)cycloalkyl, —C(═O)—NH-alkyl, cycloalkyl, hydroxyl, —COOH (and esters thereof), amino acid (chosen from natural and non-natural amino acids), peptide having 1-5 amino acid residues (chosen from natural and non-natural amino acids), —C(═O)alkyl where the alkyl is substituted with one or more substituents (chosen from alkyl, amino, alkoxy, haloalkyl, haloalkoxy, nitro, cyano, hydroxyl, —COOH (and esters thereof), sulfonyl, sulfonamide) and sulfonyl; or

wherein B is a piperidine group having one or more substituents chosen from hydro, halo, alkyl, alkoxy, haloalkyl, haloalkoxy, nitro, —CH 2 -aryl, —C(═O)alkyl, —C(═O)—NH-alkyl, cycloalkyl, hydroxyl, —COOH (and esters thereof), and sulfonyl; or

wherein B is a piperidine group having one or more substituents chosen from —C(═O), —C(═O)CH 3 , —CH 3 , —CH 2 CH 3 , —CH 2 CH 2 CH 3 , —C( ═O)OCH 2 CH 3 , —S(═O) 2 CH 3 , —S(═O) 2 CF 3 , —C(═O)OC(CH 3 ) 3 , —C(═O)OCH 2 -phenyl, —CH 2 -phenyl, —CH(CH 3 ) 2 , —C(═O)NHCH 2 CH 3 , —C(═O)NHCH(CH 3 ) 2 , —C(═O)NHC(CH 3 ) 3 , —C(═O)NHCH 2 C(═O)OCH 2 CH 3 , —C(═O)C(CH 3 ) 3 , —CH(CH 3 ) 2 , —CH 2 CH(CH 3 ) 2 , —C(═O)CH 2 C(CH 3 ) 3 , and cyclopentyl.

4. The pharmaceutical composition of claim 1 , wherein

B is a piperazine group substituted with one or more substituents chosen from hydro, halo, alkyl, alkoxy, haloalkyl, haloalkoxy, nitro, —CH 2 -aryl, —C(═O)alkyl, —C(═O)cycloalkyl, —C(═O)—NH-alkyl, cycloalkyl, hydroxyl, —COOH (and esters thereof), amino acid (chosen from natural and non-natural amino acids), peptide having 1-5 amino acid residues (chosen from natural and non-natural amino acids), —C(═O)alkyl where the alkyl is substituted with one or more substituents (chosen from alkyl, amino, alkoxy, haloalkyl, haloalkoxy, nitro, cyano, hydroxyl, —COOH (and esters thereof), sulfonyl, sulfonamide) and sulfonyl; or

wherein B is a piperazine group having one or more substituents chosen from hydro, halo, alkyl, alkoxy, haloalkyl, haloalkoxy, nitro, —CH 2 -aryl, —C(═O)alkyl, —C(═O)—NH-alkyl, cycloalkyl, hydroxyl, —COOH (and esters thereof), and sulfonyl; or

wherein B is a piperazine group having one or more substituents chosen from —C(═O), —C(═O)CH 3 , —CH 3 , —CH 2 CH 3 , —CH 2 CH 2 CH 3 , —C(═OCH 2 CH 3 , —S(═O) 2 CH 3 , —S(═O) 2 CF 3 , —C(═O)OC(CH 3 ) 3 , —C(═O)OCH 2 -phenyl, —CH 2 -phenyl, —CH(CH 3 ) 2 , —C(═O)NHCH 2 CH 3 , —C(═O)NHCH(CH 3 ) 2 , —C(═O)NHC(CH 3 ) 3 , —C(═O)NHCH 2 C(═O)OCH 2 CH 3 , —C(═O)C(CH 3 ) 3 , —CH(CH 3 ) 2 , —CH 2 CH(CH 3 ) 2 , —C(═O)CH 2 C(CH 3 ) 3 , and cyclopentyl.

5. The pharmaceutical composition of claim 1 , wherein

B is a pyrrolidine group substituted with one or more substituents chosen from hydro, halo, alkyl, alkoxy, haloalkyl, haloalkoxy, nitro, —CH 2 -aryl, —C(═O)alkyl, —C(═O)cycloalkyl, —C(═O)—NH-alkyl, cycloalkyl, hydroxyl, —COOH (and esters thereof), amino acid (chosen from natural and non-natural amino acids), peptide having 1-5 amino acid residues (chosen from natural and non-natural amino acids), —C(═O)alkyl where the alkyl is substituted with one or more substituents (chosen from alkyl, amino, alkoxy, haloalkyl, haloalkoxy, nitro, cyano, hydroxyl, —COOH (and esters thereof), sulfonyl, sulfonamide) and sulfonyl; or

wherein B is a pyrrolidine group having one or more substituents chosen from hydro, halo, alkyl, alkoxy, haloalkyl, haloalkoxy, nitro, —CH 2 -aryl, —C(═O)alkyl, —C(═O)—NH-alkyl, cycloalkyl, hydroxyl, —COOH (and esters thereof), and sulfonyl; or

wherein B is a pyrrolidine group having one or more substituents chosen from —C(═O), —C( ═O)CH 3 , —CH 3 , —CH 2 CH 3 , —CH 2 CH 2 CH 3 , —C(═O)OCH 2 CH 3 , —S(═O) 2 CH 3 , —S(═O) 2 CF 3 , —C(═O)OC(CH 3 ) 3 , —C(═O)OCH 2 phenyl, —CH 2 -phenyl, —CH(CH 3 ) 2 , —C(═O)NHCH 2 CH 3 , —C(═O)NHCH(CH 3 ) 2 , —C(═O)NHC(CH 3 ) 3 , —C(═O)NHCH 2 C(═O)OCH 2 CH 3 , —C(═O)C(CH 3 ) 3 , —CH(CH 3 ) 2 , —CH 2 CH(CH 3 ) 2 , —C(═O)CH 2 C(CH 3 ) 3 , and cyclopentyl.

6. The pharmaceutical composition of claim 1 , wherein

B is an azetidine group substituted with one or more substituents chosen from hydro, halo, alkyl, alkoxy, haloalkyl, haloalkoxy, nitro, —CH 2 -aryl, —C(═O)alkyl, —C(═O)cycloalkyl, —C(═O)—NH-alkyl, cycloalkyl, hydroxyl, —COOH (and esters thereof), amino acid (chosen from natural and non-natural amino acids), peptide having 1-5 amino acid residues (chosen from natural and non-natural amino acids), —C(═O)alkyl where the alkyl is substituted with one or more substituents (chosen from alkyl, amino, alkoxy, haloalkyl, haloalkoxy, nitro, cyano, hydroxyl, —COOH (and esters thereof), sulfonyl, sulfonamide) and sulfonyl; or

wherein B is an azetidine group having one or more substituents chosen from hydro, halo, alkyl, alkoxy, haloalkyl, haloalkoxy, nitro, —CH 2 -aryl, —C(═O)alkyl, —C(═O)—NH-alkyl, cycloalkyl, hydroxyl, —COOH (and esters thereof), and sulfonyl; or

wherein B is an azetidine group having one or more substituents chosen from —C(═O), —C(═O)CH 3 , —CH 3 , —CH 2 CH 3 , —CH 2 CH 2 CH 3 , —C═O)OCH 2 CH 3 , —S(═O) 2 CH 3 , —S(═O) 2 CF 3 , —C(═O)OC(CH 3 ) 3 , —C(═O)OCH 2 -phenyl, —CH 2 -phenyl, —CH(CH 3 ) 2 , —C(═O)NHCH 2 CH 3 , —C(═O)NHCH(CH 3 ) 2 , —C(═O)NHC(CH 3 ) 3 , —C(═O)NHCH 2 C(═O)OCH 2 CH 3 , —C(═O)C(CH 3 ) 3 , —CH(CH 3 ) 2 , —CH 2 CH(CH 3 ) 2 , —C(═O)CH 2 C(CH 3 ) 3 , and cyclopentyl.

7. The pharmaceutical composition of claim 1 , wherein

B is a homopiperidine group substituted with one or more substituents chosen from hydro, halo, alkyl, alkoxy, haloalkyl, haloalkoxy, nitro, —CH 2 -aryl, —C(═O)alkyl, —C(═O)cycloalkyl, —C(═O)—NH-alkyl, cycloalkyl, hydroxyl, —COOH (and esters thereof), amino acid (chosen from natural and non-natural amino acids), peptide having 1-5 amino acid residues (chosen from natural and non-natural amino acids), —C(═O)alkyl where the alkyl is substituted with one or more substituents (chosen from alkyl, amino, alkoxy, haloalkyl, haloalkoxy, nitro, cyano, hydroxyl, —COOH (and esters thereof), sulfonyl, sulfonamide) and sulfonyl; or

wherein B is a homopiperidine group having one or more substituents chosen from hydro, halo, alkyl, alkoxy, haloalkyl, haloalkoxy, nitro, —CH 2 -aryl, —C(═O)alkyl, —C(═O)—NH-alkyl, cycloalkyl, hydroxyl, —COOH (and esters thereof), and sulfonyl; or

wherein B is a homopiperidine group having one or more substituents chosen from —C(═O), —C(═O)CH 3 , —CH 3 , —CH 2 CH 3 , —CH 2 CH 2 CH 3 , —C(═O)OCH 2 CH 3 , —S(═O) 2 CH 3 , —S(═O) 2 CF 3 , —C(═O)OC(CH 3 ) 3 , —C(═O)OCH 2 -phenyl, —CH 2 -phenyl, —CH(CH 3 ) 2 , —C(═O)NHCH 2 CH 3 , —C(═O)NHCH(CH 3 ) 2 , —C(═O)NHC(CH 3 ) 3 , —C(═O)NHCH 2 C(═O)OCH 2 CH 3 , —C(═O)C(CH 3 ) 3 , —CH(CH 3 ) 2 , —CH 2 CH(CH 3 ) 2 , —C(═O)CH 2 C(CH 3 ) 3 , and cyclopentyl.

8. The pharmaceutical composition of claim 1 , wherein L 1 is —S—.

9. The pharmaceutical composition of claim 1 , wherein

L 2 is —(CH 2 ) n —(CH 2 ) n —, and each n is independently chosen from 0, 1, 2, and 3 and wherein each carbon can be optionally substituted with one or more substituents independently chosen from hydroxyl, halo, alkoxy, alkyl, amino, —NR 2 R 3 , —NHSO 2 R 4 , —NHC(═O)NR 2 R 3 , heteroaryl, aryl, or a heterocycle;

R 2 and R 3 are independently chosen from —H, alkyl, or —C(═O)OR 4 ; and

R 4 is a C 1 -C 4 alkyl.

10. The pharmaceutical composition of claim 1 , wherein R1 is hydro.

11. A pharmaceutical composition according to claim 1 wherein said compound of Formula I is selected from

9-[2-(1-Acetylpiperidin-4-yl)ethyl]-8-[(6-bromo-1,3-benzodioxol-5-yl)thio]-9H-purin-6-amine,

4-(2-{6-Amino-8-[(6-bromo-1,3-benzodioxol-5-yl)thio]-9H-purin-9-yl}ethyl)piperidine-1-carbaldehyde,

4-(2-{6-Amino-8-[(7-bromo-2,3-dihydro-1,4-benzodioxin-6-yl)thio]-9H-purin-9-yl}ethyl)piperidine-1-carbaldehyde,

(2S)-1-[4-(2-{6-Amino-8-[(6-bromo-1,3-benzodioxol-5-yl)thio]-9H-purin-9-yl}ethyl)piperidin-1-yl]-1-oxopropan-2-ol,

4-(2-{6-Amino-8-[(1-oxo-2,3-dihydro-1H-inden-5-yl)thio]-9H-purin-9-yl}ethyl)piperidine-1-carbaldehyde,

2-[4-(2-{6-Amino-8-[(6-bromo-1,3-benzodioxol -5-yl)thio]-9H-purin-9-yl}ethyl)piperidin-1-yl]-2-oxoethanol, and

6-({9-[2-(1-Acetylpiperidin-4-yl)ethyl]-6-amino-9H-purin-8-yl}thio)-1,3-benzodioxole-5-carbonitrile,

or a pharmaceutically acceptable salt thereof.

12. The pharmaceutical composition of claim 11 , wherein the compound of Formula I is 9-[2-(1-acetylpiperidin-4-yl)ethyl]-8-[(6-bromo-1,3-benzodioxol-5-yl)thio]-9H-purin-6-amine.

13. The pharmaceutical composition of claim 11 , wherein the compound of Formula I is 4-(2-{6-amino-8-[(6-bromo-1,3-benzodioxol-5-yl)thio]-9H-purin-9-yl}ethyl)piperidine-1-carbaldehyde.

14. The pharmaceutical composition of claim 11 , wherein the compound of Formula I is (2S)-1-[4-(2-{6-amino-8-[(6-bromo-1,3-benzodioxol-5-yl)thio]-9H-purin-9-yl}ethyl)piperidin-1-yl]-1-oxopropan-2-ol.

15. The pharmaceutical composition of claim 11 , wherein the compound of Formula I is 2-[4-(2-{6-Amino-8-[(6-bromo-1,3-benzodioxol-5-yl)thio]-9H-purin-9-yl}ethyl)piperidin-1-yl]-2-oxoethanol.

16. The pharmaceutical composition of claim 11 , wherein the compound of Formula I is 6-({9-[2-(1-Acetylpiperidin-4-yl)ethyl]-6-amino-9H-purin-8-yl}thio)-1,3-benzodioxole-5-carbonitrile.

17. A pharmaceutical composition comprising, a pharmaceutically acceptable carrier and an effective amount of one or more compounds of Formula I, or a pharmaceutically acceptable salt thereof,

wherein:

A is chosen from a substituted or unsubstituted indanone or indone group;

B is chosen from a substituted or unsubstituted aryl, heteroaryl, heterocyclic, or carbocyclic group;

R1 is chosen from hydro, alkyl, aryl, heteroaryl, amino, or halo;

L 1 can be saturated, partially saturated, or unsaturated, and is chosen from —(CH 2 ) n —(CH 2 ) n —, —(CH 2 ) n C(═O)(CH 2 ) n —, —(CH 2 ) n C(═O)NH(CH 2 ) n —,—(CH 2 ) n NHC(═O)O(CH 2 ) n —, (CH 2 ) n NHC(═O)NH(CH 2 ) n —, —(CH 2 ) n NHC(═S)S(CH 2 ) n —, —(CH 2 ) n OC(═O)S(CH 2 ) n —, —(CH 2 ) n NH(CH 2 ) n —, —(CH 2 ) n O(CH 2 ) n —, —(CH 2 ) n S(CH 2 ) n —, or —(CH 2 ) n NHC(═S)NH(CH 2 ) n —, where each n is independently chosen from 0, 1, 2, 3, 4, 5, 6, 7, or 8, and wherein each carbon and/or nitrogen can be optionally substituted with one or more substituents independently chosen from hydroxyl, halo, alkoxy, alkyl, amino, —NR 2 R 3 , —NHSO 2 R 4 , —NHC(═O)NR 2 R 3 , heteroaryl, aryl, cycloalkyl, or a heterocycle;

R 2 and R 3 are independently chosen from —H, alkyl, or —C(═O)OR 4 ; and

R 4 is a C 1 -C 4 alkyl; and

L 2 can be saturated, partially saturated, or unsaturated, and is chosen from —(CH 2 ) n —(CH 2 ) n —, —(CH 2 ) n C(═O)(CH 2 ) n —, —(CH 2 ) n C(═O)NH(CH 2 ) n —, —(CH 2 ) n NHC(═O)O(CH 2 ) n —, —(CH 2 ) n NHC(═O)NH(CH 2 ) n —, —(CH 2 ) n NHC(═S)S(CH 2 ) n —, —(CH 2 ) n C(═O)S(CH 2 ) n —, —(CH 2 ) n NH(CH 2 ) n —, —(CH 2 ) n O(CH 2 ) n —, —(CH 2 ) n S(CH 2 ) n —, or —(CH 2 ) n NHC(═S)NH(CH 2 ) n —, where each n is independently chosen from 0, 1, 2, 3, 4, 5, 6, 7, or 8, and wherein each carbon and/or nitrogen can be optionally substituted with one or more substituents independently chosen from hydroxyl, halo, alkoxy, alkyl, amino, —NR 2 R 3 , —NHSO 2 R 4 ,

—NHC(═O)NR 2 R 3 , heteroaryl, aryl, cycloalkyl, and heterocyclic; wherein R 2 and R 3 are independently chosen from —H, alkyl, or —C(═O)0R 4 ; and wherein R 4 is a C 1 -C 4 alkyl.

18. The pharmaceutical composition of claim 17 , wherein

A is a substituted indanone group, having from 1-5 substituents independently chosen from acylamino, acyloxy, alkenyl, alkoxy, alkyl, alkylthio, alkynyl, amino, aryl, arylalkyl, arylalkenyl, arylalkynyl, arylalkoxy, aryloxy, arylthio, carbocycle, cyano, cyanato, halo, haloalkyl, halophenyl, hydroxyl, heteroaryl, heteroaryloxy, heterocycle, heteroarylalkoxy, isocyanato, isothiocyanato, nitro, sulfinyl, sulfonyl, sulfonamide, thiocarbonyl, thiocyanato, trihalomethanesulfonamido, O-carbamyl, N-carbamyl, O-thiocarbamyl, N-thiocarbamyl, and C-amido.

19. The pharmaceutical composition of claim 17 , wherein

A is a substituted indane group, having from 1-5 substituents independently chosen from acylamino, acyloxy, alkenyl, alkoxy, alkyl, alkylthio, alkynyl, amino, aryl, arylalkyl, arylalkenyl, arylalkynyl, arylalkoxy, aryloxy, arylthio, carbocycle, cyano, cyanato, halo, haloalkyl, halophenyl, hydroxyl, heteroaryl, heteroaryloxy, heterocycle, heteroarylalkoxy, isocyanato, isothiocyanato, nitro, sulfinyl, sulfonyl, sulfonamide, thiocarbonyl, thiocyanato, trihalomethanesulfonamido, O-carbamyl, N-carbamyl, O-thiocarbamyl, N-thiocarbamyl, and C-amido.

Assignments (11)
SECURITY INTEREST Recorded Jul 17, 2025
From: MADRIGAL PHARMACEUTICALS, INC.
To: LSI FINANCING LLC, AS ADMINISTRATIVE AGENT
Reel/Frame 072038/0693 →
SECURITY INTEREST Recorded Jun 23, 2025
From: ORPHAI THERAPEUTICS INC.
To: ACADIA WOODS PARTNERS, LLC
Reel/Frame 071697/0788 →
CHANGE OF NAME Recorded May 3, 2021
From: SYNTA PHARMACEUTICALS CORP.
To: MADRIGAL PHARMACEUTICALS, INC.
Reel/Frame 056121/0785 →
LIEN Recorded Jan 9, 2017
From: STOEL RIVES LLP
To: SUNFLOWER RESEARCH LLC
Reel/Frame 040900/0229 →
SECURITY INTEREST Recorded Jan 9, 2017
From: SUNFLOWER RESEARCH LLC
To: STOEL RIVES LLP
Reel/Frame 040903/0839 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 2, 2016
From: ALZHEIMER'S INSTITUTE OF AMERICA, INC.
To: SEXTON, RONALD
Reel/Frame 039314/0608 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 2, 2016
From: MYREXIS, INC.
To: ALZHEIMER'S INSTITUTE OF AMERICA, INC.
Reel/Frame 039314/0583 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 2, 2016
From: SEXTON, RONALD
To: SUNFLOWER RESEARCH LLC
Reel/Frame 039314/0662 →
LIEN Recorded May 21, 2015
From: SEXTON, RONALD
To: STOEL RIVES LLP
Reel/Frame 035749/0133 →
CHANGE OF NAME Recorded Aug 18, 2010
From: MYRIAD PHARMACEUTICALS, INC.
To: MYREXIS, INC.
Reel/Frame 024856/0638 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 24, 2009
From: MYRIAD GENETICS, INC.
To: MYRIAD PHARMACEUTICALS, INC.
Reel/Frame 023137/0560 →