IP Library Granted Patent US 8,481,513
Granted Patent B2
US 8,481,513 · App. 12/727,114 · Granted Jul 9, 2013

3, 10, and 12a substituted tetracycline compounds

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Quick Facts
Patent No.
US 8,481,513
App. No.
12/727,114
Granted
Jul 9, 2013
Kind
B2
Abstract

The present invention pertains to novel 3, 10, and/or 12a-substituted tetracycline compounds. These tetracycline compounds can be used to treat numerous tetracycline compound-responsive states, such as bacterial infections and neoplasms, as well as other known applications for minocycline and tetracycline compounds in general, such as blocking tetracycline efflux and modulation of gene expression.

Claims (49)

1. A compound of Formula I:

wherein:

X is CHC(R 13 Y′Y) or CR 6′ R 6 ;

R 2″ is —C(═O)NR 2 R 2′ or —CN;

R 2 , R 2′ , R 4a and R 4b are each independently hydrogen, alkyl, alkenyl, alkynyl, alkoxy, alkylthio, alkylsulfinyl, alkylsulfonyl, alkylamino, arylalkyl, aryl, heterocyclic or heteroaromatic;

R 3 , R 11 and R 12″ are each independently hydrogen, alkyl, alkenyl, aryl, alkynyl, arylalkyl, acetyl, alkylcarbonyl, alkenylcarbonyl, arylcarbonyl, alkynylcarbonyl, alkyloxycarbonyl, alkenyloxycarbonyl, alkynyloxycarbonyl, aryloxycarbonyl, alkylaminocarbonyl, alkenylaminocarbonyl, alkynylaminocarbonyl, arylaminocarbonyl, alkylthiocarbonyl, alkenylthiocarbonyl, alkynylthiocarbonyl, arylthiocarbonyl, alkyloxythiocarbonyl, alkenyloxythiocarbonyl, alkynyloxythiocarbonyl, aryloxythiocarbonyl, alkylaminothiocarbonyl, alkenylaminothiocarbonyl, alkynylaminothiocarbonyl, arylaminothiocarbonyl, alkylthiothiocarbonyl, alkenylthiothiocarbonyl, alkynylthiothiocarbonyl or arylthiothiocarbonyl;

R 10 is hydrogen, alkenyl, aryl, alkynyl, arylalkyl, alkenylcarbonyl, arylcarbonyl, alkynylcarbonyl, alkyloxycarbonyl, alkenyloxycarbonyl, alkynyloxycarbonyl, aryloxycarbonyl, alkylaminocarbonyl, alkenylaminocarbonyl, alkynylaminocarbonyl, arylaminocarbonyl, alkylthiocarbonyl, alkenylthiocarbonyl, alkynylthiocarbonyl, arylthiocarbonyl, alkyloxythiocarbonyl, alkenyloxythiocarbonyl, alkynyloxythiocarbonyl, aryloxythiocarbonyl, alkylaminothiocarbonyl, alkenylaminothiocarbonyl, alkynylaminothiocarbonyl, arylaminothiocarbonyl, alkylthiothiocarbonyl, alkenylthiothiocarbonyl, alkynylthiothiocarbonyl or arylthiothiocarbonyl;

R 12 is hydrogen, alkyl, alkenyl, aryl, alkynyl, arylalkyl, alkenylcarbonyl, alkynylcarbonyl, alkyloxycarbonyl, alkenyloxycarbonyl, alkynyloxycarbonyl, aryloxycarbonyl, alkenylaminocarbonyl, alkynylaminocarbonyl, alkylthiocarbonyl, alkenylthiocarbonyl, alkynylthiocarbonyl, arylthiocarbonyl, alkyloxythiocarbonyl, alkenyloxythiocarbonyl, alkynyloxythiocarbonyl, aryloxythiocarbonyl, alkylaminothiocarbonyl, alkenylaminothiocarbonyl, alkynylaminothiocarbonyl, arylaminothiocarbonyl, alkylthiothiocarbonyl, alkenylthiothiocarbonyl, alkynylthiothiocarbonyl or arylthiothiocarbonyl, provided that at least one of R 3 , R 10 , R 11 or R 12 is not hydrogen when R 12′ is OR 12 ;

R 4 and R 4′ are each independently NR 4a R 4b , alkyl, alkenyl, alkynyl, hydroxyl, halogen or hydrogen;

R 5 is hydroxyl, hydrogen, thiol, alkanoyl, aroyl, alkaroyl, aryl, heteroaromatic, alkyl, alkenyl, alkynyl, alkoxy, alkylthio, alkylsulfinyl, alkylsulfonyl, alkylamino, arylalkyl, alkyl carbonyloxy or aryl carbonyloxy;

R 6 and R 6′ are each independently hydrogen, hydroxyl, halogen, thiol, alkyl, alkenyl, alkynyl, aryl, alkoxy, alkylthio, alkylsulfinyl, alkylsulfonyl, alkylamino or arylalkyl;

R 7 is hydrogen, hydroxyl, halogen, thiol, nitro, alkyl, alkenyl, alkynyl, aryl, alkoxy, alkylthio, alkylsulfinyl, alkylsulfonyl, arylalkyl, arylalkenyl, arylalkynyl, acyl, aminoalkyl, heterocyclic, thionitroso or —(CH 2 ) 1-3 NR 7c C(═W′)WR 7a ;

R 8 is hydrogen, hydroxyl, halogen, thiol, nitro, alkyl, alkenyl, alkynyl, aryl, alkoxy, alkylthio, alkylsulfinyl, alkylsulfonyl, alkylamino, amino, arylalkenyl, arylalkynyl, acyl, aminoalkyl, heterocyclic, thionitroso or —(CH 2 ) 0-3 NR 8c C(=E′)ER 8a ;

R 9 is hydrogen, hydroxyl, halogen, thiol, nitro, alkyl, alkenyl, alkynyl, aryl, alkoxy, alkylthio, alkylsulfinyl, alkylsulfonyl, arylalkyl, amino, arylalkenyl, arylalkynyl, acyl, aminoalkyl, heterocyclic, thionitroso or —(CH 2 ) 0-3 NR 9c C(═Z′)ZR 9a ;

R 7a , R 7b , R 7c , R 7d , R 7e , R 7f , R 8a , R 8b , R 8c , R 8d , R 8e , R 8f , R 9a , R 9b , R 9c , R 9d , R 9e and R 9f are each independently hydrogen, acyl, alkyl, alkenyl, alkynyl, alkoxy, alkylthio, alkylsulfinyl, alkylsulfonyl, alkylamino, arylalkyl, aryl, heterocyclic or heteroaromatic;

R 12′ is OR 12 or NR 12 R 12″ ;

R 13 is hydrogen, hydroxyl, alkyl, alkenyl, alkynyl, alkoxy, alkylthio, aryl, alkylsulfinyl, alkylsulfonyl, alkylamino or arylalkyl;

E is CR 8d R 8e ; S, NR 8b or O;

E′ is O, NR 8 or S;

W is CR 7d R 7e , S, NR 7b or O;

W′ is O, NR 7f or S;

Z is CR 9d R 9e , S, NR 9b or O;

Z′ is O, S or NR 9f ; and

Y′ and Y are each independently hydrogen, halogen, hydroxyl, cyano, sulfhydryl, amino, alkyl, alkenyl, alkynyl, alkoxy, alkylthio, alkylsulfinyl, alkylsulfonyl, alkylamino or arylalkyl, or pharmaceutically acceptable salts, esters or enantiomers thereof.

2. The compound of claim 1 , wherein X is CR 6 R 6′ ; R 2 , R 2′ , R 6 , R 6′ , R 8 and R 11 are each hydrogen; and R 5 is hydroxyl or hydrogen.

3. The compound of claim 2 , wherein R 4 is dialkylamino; and R 4′ and R 5 are each hydrogen.

4. The compound of claim 1 , wherein R 3 is hydrogen, alkyl, alkenyl, aryl, acetyl, arylalkyl, alkynyl, alkylcarbonyl, alkenylcarbonyl, arylcarbonyl, alkynylcarbonyl, alkyloxycarbonyl, alkenyloxycarbonyl, alkynyloxycarbonyl, aryloxycarbonyl, alkylaminocarbonyl, alkenylaminocarbonyl, alkynylaminocarbonyl, arylaminocarbonyl, alkylthiocarbonyl, alkenylthiocarbonyl, alkynylthiocarbonyl, arylthiocarbonyl, alkyloxythiocarbonyl, alkenyloxythiocarbonyl, alkynyloxythiocarbonyl, aryloxythiocarbonyl, alkylaminothiocarbonyl, alkenylaminothiocarbonyl, alkynylaminothiocarbonyl, arylaminothiocarbonyl, alkylthiothiocarbonyl, alkenylthiothiocarbonyl, alkynylthiothiocarbonyl or aryithiothiocarbonyl.

5. The compound of claim 4 , wherein R 3 is benzyl.

6. The compound of claim 4 , wherein R 3 is alkyl.

7. The compound of claim 4 , wherein R 3 is acetyl.

8. The compound of claim 4 , wherein R 3 is alkenyl.

9. The compound of claim 4 , wherein R 3 is hydrogen.

10. The compound of claim 1 , wherein R 10 is hydrogen, alkenyl, aryl, arylalkyl, alkynyl, alkenylcarbonyl, arylcarbonyl, alkynylcarbonyl, alkyloxycarbonyl, alkenyloxycarbonyl, alkynyloxycarbonyl, aryloxycarbonyl, alkylaminocarbonyl, alkenylaminocarbonyl, alkynylaminocarbonyl, arylaminocarbonyl, alkylthiocarbonyl, alkenylthiocarbonyl, alkynylthiocarbonyl, arylthiocarbonyl, alkyloxythiocarbonyl, alkenyloxythiocarbonyl, alkynyloxythiocarbonyl, aryloxythiocarbonyl, alkylaminothiocarbonyl, alkenylaminothiocarbonyl, alkynylaminothiocarbonyl, arylaminothiocarbonyl, alkylthiothiocarbonyl, alkenylthiothiocarbonyl, alkynylthiothiocarbonyl or arylthiothiocarbonyl.

11. The compound of claim 10 , wherein R 10 is benzyl.

12. The compound of claim 10 , wherein R 10 is alkenyl.

13. The compound of claim 10 , wherein R 10 is hydrogen.

14. The compound of claim 1 , wherein R 12 is hydrogen, alkyl, alkenyl, aryl, arylalkyl, alkynyl, alkenylcarbonyl, alkynylcarbonyl, alkyloxycarbonyl, alkenyloxycarbonyl, alkynyloxycarbonyl, aryloxycarbonyl, alkenylaminocarbonyl, alkynylaminocarbonyl, alkylthiocarbonyl, alkenylthiocarbonyl, alkynylthiocarbonyl, arylthiocarbonyl, alkyloxythiocarbonyl, alkenyloxythiocarbonyl, alkynyloxythiocarbonyl, aryloxythiocarbonyl, alkylaminothiocarbonyl, alkenylaminothiocarbonyl, alkynylaminothiocarbonyl, arylaminothiocarbonyl, alkylthiothiocarbonyl, alkenylthiothiocarbonyl, alkynylthiothiocarbonyl or arylthiothiocarbonyl.

15. The compound of claim 14 , wherein R 12 is benzyl.

16. The compound of claim 14 , wherein R 12 is hydrogen.

17. A compound selected from the group consisting of:

or pharmaceutically acceptable salts, esters or enantiomers thereof.

18. A method for treating a tetracycline responsive state in a subject, comprising administering to said subject a compound of claim 1 or 17 , such that said tetracycline responsive state is treated.

19. The method of claim 18 , wherein said compound is non-antibacterial.

20. The method of claim 18 wherein said tetracycline responsive state is an inflammatory process associated state, a cancer, a lung injury, an eye disorder, a stroke or a neurological disorder.

21. The method of claim 20 , wherein said neurological disorder is Alzheimer's disease, Huntington's disease, Parkinson's disease, amylotropic lateral sclerosis or multiple sclerosis.

22. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 1 or 17 , and a pharmaceutically acceptable carrier.

23. A compound selected from the group consisting of:

or pharmaceutically acceptable salts, esters or enantiomers thereof.

24. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 23 , and a pharmaceutically acceptable carrier.

Assignments (5)
TERMINATION OF LIEN ON PATENTS Recorded Dec 23, 2014
From: MINTZ LEVIN COHN FERRIS GLOVSKY AND POPEO PC
To: PARATEK PHARMACEUTICALS, INC.
Reel/Frame 034700/0377 →
RELEASE OF SECURITY INTEREST Recorded Oct 31, 2014
From: HBM HEALTHCARE INVESTMENTS (CAYMAN) LTD., AS COLLATERAL AGENT
To: PARATEK PHARMACEUTICALS, INC.
Reel/Frame 034113/0910 →
SECURITY INTEREST Recorded Mar 14, 2014
From: PARATEK PHARMACEUTICALS, INC.
To: HBM HEALTHCARE INVESTMENTS (CAYMAN) LTD., AS COLLATERAL AGENT
Reel/Frame 032448/0001 →
NOTICE Recorded Mar 8, 2013
From: PARATEK PHARMACEUTICALS, INC.
To: MINTZ LEVIN COHN FERRIS GLOVSKY AND POPEO PC
Reel/Frame 029940/0106 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 15, 2012
From: NELSON, MARK L.; OHEMENG, KWASI; BANDARAGE, UPUL; CHEN, JACKSON; ISMAIL, MOHAMED Y.; KIM, OAK K.
To: PARATEK PHARMACEUTICALS, INC.
Reel/Frame 029126/0941 →