IP Library Granted Patent US 8,377,680
Granted Patent B2
US 8,377,680 · App. 12/776,365 · Granted Feb 19, 2013

Microorganisms and methods for the biosynthesis of adipate, hexamethylenediamine and 6-aminocaproic acid

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Quick Facts
Patent No.
US 8,377,680
App. No.
12/776,365
Granted
Feb 19, 2013
Kind
B2
Abstract

The invention provides a non-naturally occurring microbial organism having a 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway. The microbial organism contains at least one exogenous nucleic acid encoding an enzyme in the respective 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway. The invention additionally provides a method for producing 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid. The method can include culturing a 6-aminocaproic acid, caprolactam or hexametheylenediamine producing microbial organism, where the microbial organism expresses at least one exogenous nucleic acid encoding a 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid pathway enzyme in a sufficient amount to produce the respective product, under conditions and for a sufficient period of time to produce 6-aminocaproic acid, caprolactam, hexametheylenediamine or levulinic acid.

Claims (49)

1. A non-naturally occurring microbial organism comprising a hexamethylenediamine pathway and at least two exogenous nucleic acids encoding a hexamethylenediamine pathway enzyme expressed in a sufficient amount to produce hexamethylenediamine, said hexamethylenediamine pathway comprising:

(A) 6-aminocaproate N-acetyltransferase;

(B) 6-acetamidohexanoate kinase;

(C) [(6-acetamidohexanoyl)oxy]phosphonate (6-AAHOP) oxidoreductase;

(D) 6-acetamidohexanal aminotransferase or 6-acetamidohexanal oxidoreductase (aminating); and

(E) 6-acetamidohexanamine N-acetyltransferase or 6-acetamidohexanamine hydrolase (amide).

2. The non-naturally occurring microbial organism of claim 1 , further comprising a 6-aminocaproic acid pathway.

3. The non-naturally occurring microbial organism of claim 2 , wherein said 6-aminocaproic acid pathway comprises:

(A) CoA-dependent aldehyde dehydrogenase; and

(B) transaminase or 6-aminocaproate dehydrogenase.

4. The non-naturally occurring microbial organism of claim 2 , wherein said 6-aminocaproic acid pathway comprises:

(A) 3-oxo-6-aminohexanoyl-CoA thiolase;

(B) 3-oxo-6-aminohexanoyl-CoA/acyl-CoA transferase, 3-oxo-6-aminohexanoyl-CoA synthase, or 3-oxo-6-aminohexanoyl-CoA hydrolase;

(C) 3-oxo-6-aminohexanoate reductase;

(D) 3-hydroxy-6-aminohexanoate dehydratase; and

(E) 6-aminohex-2-enoate reductase.

5. The non-naturally occurring microbial organism of claim 1 , wherein said microbial organism comprises three exogenous nucleic acids each encoding an hexamethylenediamine pathway enzyme.

6. The non-naturally occurring microbial organism of claim 1 , wherein said microbial organism comprises four exogenous nucleic acids each encoding an hexamethylenediamine pathway enzyme.

7. The non-naturally occurring microbial organism of claim 1 , wherein said microbial organism comprises five exogenous nucleic acids each encoding an hexamethylenediamine pathway enzyme.

8. The non-naturally occurring microbial organism of claim 1 , wherein said hexamethylenediamine pathway comprises:

(A) 6-aminocaproate N-acetyltransferase;

(B) 6-acetamidohexanoate kinase;

(C) 6-AAHOP oxidoreductase;

(D) 6-acetamidohexanal aminotransferase; and

(E) 6-acetamidohexanamine N-acetyltransferase.

9. The non-naturally occurring microbial organism of claim 1 , wherein said hexamethylenediamine pathway comprises:

(A) 6-aminocaproate N-acetyltransferase;

(B) 6-acetamidohexanoate kinase;

(C) 6-AAHOP oxidoreductase;

(D) 6-acetamidohexanal aminotransferase; and

(E) 6-acetamidohexanamine hydrolase (amide).

10. The non-naturally occurring microbial organism of claim 1 , wherein said hexamethylenediamine pathway comprises:

(A) 6-aminocaproate N-acetyltransferase;

(B) 6-acetamidohexanoate kinase;

(C) 6-AAHOP oxidoreductase;

(D) 6-acetamidohexanal oxidoreductase (aminating); and

(E) 6-acetamidohexanamine N-acetyltransferase.

11. The non-naturally occurring microbial organism of claim 1 , wherein said hexamethylenediamine pathway comprises:

(A) 6-aminocaproate N-acetyltransferase;

(B) 6-acetamidohexanoate kinase;

(C) 6-AAHOP oxidoreductase;

(D) 6-acetamidohexanal oxidoreductase (aminating); and

(E) 6-acetamidohexanamine hydrolase (amide).

12. The non-naturally occurring microbial organism of claim 1 , wherein said at least two exogenous nucleic acid is a heterologous nucleic acid.

13. The non-naturally occurring microbial organism of claim 1 , wherein said non-naturally occurring microbial organism is in culture medium comprising dissolved oxygen in an amount that is less than 10% of saturation.

14. The non-naturally occurring microbial organism of claim 1 , wherein said non-naturally occurring microbial organism is in culture medium, wherein said culture medium is in an atmosphere of less than 1% oxygen.

15. A method for producing hexamethylenediamine, comprising culturing the non-naturally occurring microbial organism of claim 1 under conditions and for a sufficient period of time to produce hexamethylenediamine.

16. The method of claim 15 , wherein said non-naturally occurring microbial organism is in culture medium, wherein said culture medium is in an atmosphere of less than 1% oxygen.

17. The method of claim 16 , wherein said non-naturally occurring microbial organism is in culture medium comprising dissolved oxygen in an amount that is less than 10% of saturation.

Assignments (4)
SECURITY INTEREST Recorded Feb 10, 2026
From: GENOMATICA, INC.
To: AGAIN BIO APS
Reel/Frame 074708/0001 →
SECURITY INTEREST Recorded Dec 9, 2025
From: GENOMATICA, INC.
To: NOVO HOLDINGS A/S, AS COLLATERAL AGENT
Reel/Frame 073915/0027 →
SECURITY INTEREST Recorded Jun 2, 2025
From: GENOMATICA, INC.
To: OXFORD FINANCE LLC
Reel/Frame 071471/0770 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 23, 2010
From: BURK, MARK J.; BURGARD, ANTHONY P.; OSTERHOUT, ROBIN E.; PHARKYA, PRITI
To: GENOMATICA, INC.
Reel/Frame 024874/0586 →