Counting biological agents on biological growth plates
The invention is directed to counting techniques for counting biological agents on a biological growth plate or similar medium. In order to automate the counting of biological agents, a biological growth plate is inserted into a biological scanning unit. Upon insertion of the biological growth plate, the biological scanning unit generates an image of the plate. Then, the amount of biological agents that appear in the image, such as a number of bacteria colonies, can be counted or otherwise determined using image processing and analysis routines performed either by the scanning unit or an external computing device, such as a desktop computer, workstation or the like. A variety of counting rules are described herein that can be used to improve the accuracy of automated counts of biological agents on a biological growth plate.
1. A method comprising:
receiving one or more images of a biological growth medium;
identifying a first count of biological agents on the biological growth medium;
determining whether the first count is below a threshold;
reducing the first count to generate a second count when the first count is below the threshold and one or more biological agents identified in the first count are determined to be in close proximity to one or more other biological agents identified in the first count;
avoiding reduction of the first count to generate the second count when the first count is not below the threshold; and
avoiding reduction of the first count to generate the second count when one or more biological agents in the first count are not determined to be in close proximity to one or more other biological agents identified in the first count.
2. A computer readable medium comprising computer readable instructions that when executed in a processor:
receive one or more images of a biological growth medium;
identify a first count of biological agents on the biological growth medium;
determine whether the first count is below a threshold;
reduce the first count to generate a second count when the first count is below the threshold and one or more biological agents identified in the first count are determined to be in close proximity to one or more other biological agents identified in the first count;
avoid reduction of the first count to generate the second count when the first count is not below the threshold; and
avoid reduction of the first count to generate the second count when one or more biological agents in the first count are not determined to be in close proximity to one or more other biological agents identified in the first count.
3. A system comprising:
an imaging device to generate one or more images of a biological growth medium; and
a processor to receive the images, identify a first count of biological agents on the biological growth medium, determine whether the first count is below a threshold, reduce the first count to generate a second count when the first count is below the threshold and one or more biological agents identified in the first count are determined to be in close proximity to one or more other biological agents identified in the first count, avoid reduction of the first count to generate the second count when the first count is not below the threshold, and avoid reduction of the first count to generate the second count when one or more biological agents in the first count are not determined to be in close proximity to one or more other biological agents identified in the first count.