IP Library Granted Patent US 8,012,740
Granted Patent B2
US 8,012,740 · App. 12/798,248 · Granted Sep 6, 2011

Systems for genome selection

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Quick Facts
Patent No.
US 8,012,740
App. No.
12/798,248
Granted
Sep 6, 2011
Kind
B2
Abstract

Systems, methods, compositions and apparatus relating to genome selection are disclosed.

Claims (70)

1. An apparatus comprising:

one or more sourcing units including one or more first sources of one or more related spermatid genomes;

one or more monitoring units operable to detect one or more genetic characteristics of one or more of the one or more related spermatid genomes; and

one or more controller units operable to separate one or more of the one or more related spermatid genomes at least partially based on the one or more genetic characteristics of one or more of the one or more related spermatid genomes.

2. The apparatus of claim 1 , wherein one or more first sources of one or more related spermatid genomes comprises:

one or more first sources, the one or more first sources positioned to provide the one or more related spermatid genomes to one or more of one or more first locations, the one or more monitoring units, the one or more controller units, one or more computing units, one or more hybridization units, one or more sequencing units, or one or more amplifying units.

3. The apparatus of claim 1 , wherein the one or more sourcing units further include one or more second sources of one or more of one or more probes or one or more molecular markers.

4. The apparatus of claim 3 , wherein one or more second sources of one or more of one or more probes or one or more molecular markers comprise:

the one or more second sources, the one or more second sources positioned to provide the one or more related spermatid genomes to one or more of one or more first locations, the one or more monitoring units, the one or more controller units, one or more computing units, one or more hybridization units, one or more sequencing units, or one or more amplifying units.

5. The apparatus of claim 1 , wherein the one or more sourcing units are further operable to receive one or more inputs.

6. The apparatus of claim 5 , wherein the one or more sourcing units are further operable to receive the one or more inputs, the one or more inputs including one or more of one or more female germ line genomes, one or more spermatid genomes, one or more probes, or one or more molecular markers.

7. The apparatus of claim 1 , wherein the one or more sourcing units further include one or more third sources of one or more female germ line genomes.

8. The apparatus of claim 7 , wherein one or more third sources of one or more female germ line genomes comprises:

one or more third sources, the one or more third sources positioned to provide the one or more female germ line genomes to one or more of one or more first locations, the one or more monitoring units, the one or more controller units, one or more computing units, one or more hybridization units, one or more sequencing units, or one or more amplifying units.

9. The apparatus of claim 1 , wherein the one or more monitoring units are operable to detect one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

10. The apparatus of claim 9 , wherein the one or more monitoring units are operable to destructively detect the one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

11. The apparatus of claim 9 , wherein the one or more monitoring units are operable to detect one or more markers of the one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

12. The apparatus of claim 9 , wherein the one or more monitoring units are operable to identify one or more markers of the one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

13. The apparatus of claim 9 , wherein the one or more monitoring units are operable to detect one or more probes hybridized to the one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

14. The apparatus of claim 9 , wherein the one or more monitoring units are operable to identify one or more probes hybridized to the one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

15. The apparatus of claim 1 , wherein the one or more monitoring units are operable to amplify one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

16. The apparatus of claim 15 , wherein the one or more monitoring units are operable to amplify in situ the one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

17. The apparatus of claim 15 , wherein the one or more monitoring units are operable to amplify in vitro the one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

18. The apparatus of claim 1 , wherein the one or more monitoring units are operable to at least partially sequence one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

19. The apparatus of claim 18 , wherein the one or more monitoring units are operable to sequence in situ the one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

20. The apparatus of claim 18 , wherein the one or more monitoring units are operable to sequence in vitro the one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

21. The apparatus of claim 1 , wherein the one or more monitoring units are further operable to co-localize one or more of one or more probes or one or more molecular markers with one or more nucleic acid sequences of the one or more related spermatid genomes.

22. The apparatus of claim 1 , wherein the one or more monitoring units are further operable to hybridize one or more probes to one or more nucleic acid sequences of the one or more related spermatid genomes.

23. The apparatus of claim 22 , wherein the one or more monitoring units are further operable to destructively hybridize one or more probes to one or more nucleic acid sequences of the one or more related spermatid genomes.

24. The apparatus of claim 22 , wherein the one or more monitoring units are further operable to hybridize in situ one or more probes to one or more nucleic acid sequences of the one or more related spermatid genomes.

25. The apparatus of claim 22 , wherein the one or more monitoring units are further operable to hybridize in vitro one or more probes to one or more nucleic acid sequences of the one or more related spermatid genomes.

26. The apparatus of claim 1 , wherein the one or more monitoring units are further operable to detect one or more genetic characteristics of one or more female germ line genomes.

27. The apparatus of claim 1 , further comprising:

one or more hybridization units operable to co-localize one or more probes with one or more nucleic acids of one or more of the one or more related spermatid genomes.

28. The apparatus of claim 27 , wherein the one or more hybridization units are operable to co-localize one or more of the one or more probes or one or more molecular markers with one or more nucleic acid sequences of the one or more related spermatid genomes.

29. The apparatus of claim 27 , wherein the one or more hybridization units are operable to hybridize the one or more probes with one or more nucleic acid sequences of the one or more related spermatid genomes.

30. The apparatus of claim 1 , further comprising:

one or more sequencing units operable to sequence one or more nucleic acids of one or more of the one or more related spermatid genomes.

31. The apparatus of claim 30 , wherein the one or more sequencing units are operable to destructively sequence the one or more nucleic acids of one or more of the one or more related spermatid genomes.

32. The apparatus of claim 1 , further comprising:

one or more amplification units operable to amplify one or more nucleic acids of one or more of the one or more related spermatid genomes.

33. The apparatus of claim 1 , further comprising:

one or more computing units operable to determine the one or more genetic characteristics of one or more of the one or more related spermatid genomes.

34. The apparatus of claim 33 , wherein the one or more computing units are further operable to determine one or more of the one or more related spermatid genomes to select at least partially based on the one or more genetic characteristics of the one or more related spermatid genomes.

35. The apparatus of claim 33 , wherein the one or more computing units are further operable to determine the one or more related spermatid genomes to select at least partially based on a weighted analysis of the one or more genetic characteristics of the one or more related spermatid genomes.

36. The apparatus of claim 33 , wherein the one or more computing units are further operable to determine the one or more related spermatid genomes to select at least partially based on one or more of one or more target genetic characteristics or one or more reference genetic characteristics.

37. The apparatus of claim 33 , wherein the one or more computing units are further operable to determine the one or more related spermatid genomes to select at least partially based on a weighted analysis one or more of one or more target genetic characteristics or one or more reference genetic characteristics.

38. The apparatus of claim 33 , wherein the one or more computing units are further operable to determine one or more of the one or more related spermatid genomes to select at least partially based on one or more genetic characteristics of one or more female germ line genomes.

39. The apparatus of claim 33 , wherein the one or more computing units are further operable to determine one or more of the one or more related spermatid genomes to select at least partially based on a weighted analysis of the one or more genetic characteristics of the one or more female germ line genomes.

40. The apparatus of claim 1 , further comprising:

one or more computing units operable to receive one or more inputs.

41. The apparatus of claim 40 , wherein the one or more inputs include data representative of the one or more genetic characteristics of one or more of the one or more related spermatid genomes.

42. The apparatus of claim 40 , wherein the one or more inputs include data representative of one or more nucleic acid sequences of one or more of the one or more related spermatid genomes.

43. The apparatus of claim 40 , wherein the one or more inputs include data representative of one or more characteristics of one or more female germ line genomes.

44. The apparatus of claim 40 , wherein the one or more inputs include data representative of one or more of one or more reference genetic characteristics or one or more target genetic characteristics.

45. The apparatus of claim 1 , wherein the one or more controller units are operable to select one or more of the one or more related spermatid genomes at least partially based on a weighted combination of one or more of the one or more genetic characteristics of one or more of the one or more related spermatid genomes.

46. The apparatus of claim 1 , wherein the one or more controller units are operable to select one or more of the one or more related spermatid genomes at least partially based on one or more of one or more target genetic characteristics or one or more reference genetic characteristics.

47. The apparatus of claim 1 , wherein the one or more controller units are operable to select one or more of the one or more related spermatid genomes at least partially based on a weighted combination of one or more of one or more target genetic characteristics or one or more reference genetic characteristics.

48. The apparatus of claim 1 , wherein the one or more controller units are operable to select one or more of the one or more related spermatid genomes at least partially based on a weighted combination of one or more genetic characteristics of one or more female germ line genomes.

49. An apparatus comprising:

one or more sourcing units including one or more first sources of one or more related spermatid genomes;

one or more computing units operable to receive one or more inputs, the one or more inputs including data representative of one or more characteristics of one or more of the one or more related spermatid genomes; and

one or more controller units operable to select one or more of the one or more related spermatid genomes at least partially based on the one or more genetic characteristics of one or more of the one or more related spermatid genomes.

50. An apparatus comprising:

one or more sourcing units including one or more first sources of one or more related spermatid genomes;

one or more computing units operable to receive one or more inputs, the one or more inputs including data representative of one or more characteristics of one or more of the one or more related spermatid genomes; and

operable to determine the one or more related spermatid genomes to select at least partially based on the one or more genetic characteristics of one or more of the one or more related spermatid genomes.

51. An apparatus comprising:

one or more characterization units operable to determine one or more genetic characteristics of one or more related spermatid genomes; and

one or more controller units operable to select one or more of the one or more related spermatid genomes at least partially based on one or more of the genetic characteristics of one or more of the one or more related spermatid genomes.

Assignments (3)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 25, 2023
From: DEEP SCIENCE LLC
To: ENTERPRISE SCIENCE FUND, LLC
Reel/Frame 064719/0549 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 15, 2016
From: THE INVENTION SCIENCE FUND I, LLC
To: DEEP SCIENCE, LLC
Reel/Frame 037540/0314 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 28, 2011
From: SEARETE LLC
To: THE INVENTION SCIENCE FUND I, LLC
Reel/Frame 026664/0852 →