System and methods for rapid and automated screening of cells
View Patent ↗A system for performing automated cell screening in drug discovery, includes an automated microscope, a fast autofocus device, and a digital imaging system. Processes are implemented in software through which relevant cellular material is segmented and quantified with minimal user interaction. Improvements in the following areas: known methods for image processing are implemented in such a way that automated segmentation is achieved; sets of known measurements (pixel counting, etc.) are implemented as methods which demonstrate aspects of biology in a reliable fashion; components for automated positioning, focusing, imaging and processing of a multiplicity of samples are integrated as systems within which the segmentation and measurement methods may be mounted; and components and methods are adapted into systems which yield more highly automated and more rapid cell screening.
1. An automated control process for analyzing the translocation of material between nongranular subcellular compartments comprising the steps:
acquiring a first image of a cellular material sample providing geometric information of at least one subcellular compartment;
acquiring a second image of the cellular material sample providing information of at least one labeled molecule of interest, with label intensity corresponding to the local concentration of the labeled molecule;
wherein each image is processed by the following steps:
preprocessing;
binarization;
region growing;
morphological refinement;
sieving;
and wherein the label intensity in the second image is quantified based on the geometric information of at least one subcellular compartment from the first image, using the processed images.
2. The automated control process of claim 1 , wherein at least one subcellular compartment is a cell nucleus.
3. The automated control process of claim 1 , wherein the step of preprocessing comprises the algorithmic processes:
nonlinear suppression of high intensity peaks;
optional noise smoothing by:
adaptive noise smoothing (Gaussian); or
adaptive noise smoothing and feature enhancement by nonlinear diffusion filtering;
and
optional background correction.
4. The automated control process of claim 1 , wherein the step of binarization comprises an algorithmic process of:
thresholding by optimal histogram bipartition.
5. The automated control process of claim 1 , wherein the step of quantification comprises at least one of the algorithmic processes:
quantification by local contrast; and
distributional feature analyses.
6. A computer program stored on a computer readable medium arranged to perform the automated control process of claim 1 when executed on a computer.
7. An optomechanical system for automated analysis of cellular elaboration, comprising:
an electronic camera;
an optical subsystem providing a focused image for the camera;
a positioning subsystem positioning specimens in a plurality of containers at a location within the range of the optical subsystem;
a computer controlling the camera and the subsystems, the computer running a computer program, on a computer-readable medium, being arranged to perform an automated control process for analyzing the translocation of material between nongranular subcellular compartments comprising the steps:
acquiring a first image of a cellular material sample providing geometric information of at least one subcellular compartment;
acquiring a second image of the cellular material sample providing information of at least one labeled molecule of interest, with label intensity corresponding to the local concentration of the labeled molecule;
wherein each image is processed by the following steps:
preprocessing;
binarization;
region growing;
morphological refinement;
sieving;
and wherein the label intensity in the second image is quantified based on the geometric information of at least one subcellular compartment from the first image, using the processed images.
8. The system of claim 7 , further comprising an interface to laboratory equipment.