Compartmentalized simultaneous saccharification and fermentation of biomass

1. An apparatus for processing pretreated biomass consisting of: a saccharification vessel that is connected to a first external circulation loop wherein said first external circulation loop is external to and connected to a first semi-permeable membrane of a hollow fiber circulation loop comprising a sequestered saccharification enzyme; and

wherein said hollow fiber circulation loop is connected to a second external circulation loop that is external to and connected to a second semi-permeable membrane of the hollow fiber circulation loop; and wherein said second external circulation loop is connected to a fermentation vessel with an outlet for a target product;

wherein the first external circulation loop carries biomass and enzyme from the saccharification vessel over the outside of the first semi-permeable membrane of the hollow fiber circulation loop; and

wherein the reaction products of the hydrolyzed which pass through the first semi-permeable membrane are delivered to the hollow fiber circulation loop and then in turn to the fermentation vessel containing fermentation media and at least one biocatalyst via the second circulation loop and by passing through the second semi-permeable membrane; and

wherein the second external circulation loop recirculates the fermentation medium and biocatalyst to the first external circulation loop via the first semi-permeable membrane.

2. The apparatus of claim 1 , further comprising a series of circulation pumps including a first circulation pump for the first external circulation loop; a second circulation pump for the second external circulation loop; a third circulation pump for the internal hollow fiber loop.

3. The apparatus of claim 1 wherein the semi-permeable membranes are made of a material selected from the group consisting of: polysulfone, hydroxylated polysulfone, polyethersulfone, hydroxylated polyethersulfone, sulfonated polysulfone, polyetherketone, polyetheretherketone, polyimide, and polyetherimide.

4. The apparatus of claim 1 wherein the semi-permeable membranes have molecular weight permeability of from about 10 to about 30 kiloDaltons.

5. A method of processing pretreated biomass comprising:

(a) providing the apparatus of claim 2 ,

(b) providing a mixture of pretreated biomass and a saccharification enzyme consortium to the saccharification vessel of said apparatus wherein said mixture produces both high and low molecular weight components by saccharification;

(c) providing at least one sequestered enzyme in the hollow fiber circulation loop;

(d) delivering an amount of the mixture of (b) through the first circulation loop over the first hollow fiber semi-permeable membrane whereby said high molecular weight components of the mixture of (b) do not diffuse through said membrane and said low molecular weight components of the mixture diffuse through said membrane into the hollow fiber circulation loop;

(e) hydrolyzing the low molecular weight components that diffuse into the hollow fiber circulation loop in (d) by said at least one sequestered enzyme in said hollow fiber circulation loop whereby hydrolysate comprising fermentable sugars is formed; and

(f) delivering hydrolysate comprising fermentable sugars through a second semi-permeable membrane into a second circulation loop and to a fermentation vessel;

wherein pretreated biomass components are circulated throughout the apparatus by circulation pumps, and wherein pretreated biomass is processed.

6. The method of claim 5 , wherein said saccharification enzyme consortium of (b) comprises enzymes selected from the group consisting of: cellulases, xylanases, glycosidases, ligninases and esterases.

7. The method of claim 5 wherein the sequestered enzyme of (c) comprises an enzyme selected from the group consisting of: β-glucosidase β-xylosidase and xylanases that can hydrolyze soluble branched chain xylose oligomers.

8. The method of claim 5 wherein the fermentable sugars of (e) delivered to the fermentation vessel in (f) are converted by at least one microorganism to at least one target product.

9. The method of claim 8 wherein the target product is selectively removed from the fermentation vessel.

10. The method of claim 5 wherein hydrolysate formed by the action of said sequestered enzyme on biomass is delivered to said fermentation vessel.

11. The method of claim 5 wherein said sequestered enzyme of (c) is recycled multiple times.

12. The method of claim 5 wherein said first and said second semi-permeable membrane are each made of a material selected from the group consisting of: polysulfone, hydroxylated polysulfone, polyethersulfone, hydroxylated polyether sulfone, sulfonated polysulfone, polyetherketone, polyetheretherketone, polyimide, and polyetherimide.