IP Library Granted Patent US 8,470,817
Granted Patent B2
US 8,470,817 · App. 12/912,617 · Granted Jun 25, 2013

Compounds and methods for treatment of cancer

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Quick Facts
Patent No.
US 8,470,817
App. No.
12/912,617
Granted
Jun 25, 2013
Kind
B2
Abstract

Compounds for treating, preventing or managing cancer are disclosed. Also provided are methods for using the compounds in treatment of various cancers. Also provided are methods of treatment using the compounds together with another chemotherapy, radiation therapy, hormonal therapy, biological therapy, or immunotherapy. Pharmaceutical compositions suitable for use in the methods are also disclosed.

Claims (124)

1. A compound of Formula I:

or a pharmaceutically acceptable salt thereof; wherein

R 1 is halo, alkyl, haloalkyl, alkoxy, or hydroxyl;

R 2 and R 3 together with the nitrogen atom on which they are substituted form a substituted or unsubstituted heterocyclic ring, where substituents when present are selected from one, two or three Q 1 groups selected from alkyl, amino, alkylamino, alkoxy, hydroxyl, halo, haloalkyl, cycloalkyl, aryl, arylalkyl, alkylaryl, haloalkylaryl, heterocyclyl, heteroaryl, alkoxyalkyl, alkylcarbonyl, and alkoxycarbonyl;

R 4 and R 5 are selected as follows:

i) R 4 and R 5 are each alkyl, or

ii) R 4 and R 5 together with the nitrogen atom on which they are substituted form a substituted or unsubstituted heterocyclic ring; where substituents when present are selected from one or more Q 2 groups selected from halo, alkyl, haloalkyl, alkoxy, and hydroxyl;

R 6 is halo, alkyl, haloalkyl, alkoxy, or hydroxyl;

R 7 is hydrogen, halo, alkyl, haloalkyl, alkoxy, or hydroxyl;

n is 0 to 2;

m is 0 to 2; and

where Q 1 is optionally substituted with one, two or three groups selected from halo, alkyl, amino, alkoxy, hydroxyl, and haloalkyl.

2. The compound of claim 1 , wherein R 1 is halo or alkyl;

R 2 and R 3 together with the nitrogen atom on which they are substituted form a substituted or unsubstituted heterocyclic ring, where substituents when present are selected from one, two or three Q 1 groups selected from alkyl, amino, alkylamino, alkoxy, hydroxyl, halo, haloalkyl, cycloalkyl, aryl, arylalkyl, alkylaryl, haloalkylaryl, heterocyclyl, heteroaryl, alkoxyalkyl, alkylcarbonyl, and alkoxycarbonyl;

R 4 and R 5 are selected as follows:

i) R 4 and R 5 are each alkyl,

ii) R 4 and R 5 together with the nitrogen atom on which they are substituted form a substituted or unsubstituted 5 or 6 membered heterocyclic ring; where substituents when present are selected from one or two groups selected from halo and alkyl;

R 6 is halo, or alkyl;

R 7 is hydrogen, halo or alkyl;

n is 0 or 1; and

m is 0 or 1.

3. The compound of claim 1 , wherein R 2 and R 3 together with the nitrogen atom on which they are substituted form pyrrolidinyl, piperidinyl, piperazinyl or morpholinyl ring, where substituents when present are selected from one, two or three Q 1 groups selected from alkyl, amino, alkylamino, alkoxy, hydroxyl, halo, haloalkyl, cycloalkyl, aryl, arylalkyl, alkylaryl, haloalkylaryl, heterocyclyl, heteroaryl, alkoxyalkyl, alkylcarbonyl, and alkoxycarbonyl.

4. The compound of claim 1 , wherein Q 1 group is selected from methyl, ethyl, isopropyl, trifluoromethyl, amino, methylamino, dimethylamino, diethylamino, methoxy, methoxymethyl, hydroxyl, phenyl, trifluoromethylphenyl, cyclohexyl, piperidinyl, pyrrolidinyl, methylcarbonyl, and tert-butyloxycarbonyl.

5. The compound of claim 1 , wherein R 4 and R 5 are each methyl.

6. The compound of claim 1 , wherein the compound is of Formula IA

or a pharmaceutically acceptable salt thereof; wherein

R 2 and R 3 together with the nitrogen atom on which they are substituted form pyrrolidinyl, piperidinyl, piperazinyl or morpholinyl ring, where substituents when present are selected from one, two or three Q 1 groups selected from alkyl, amino, alkylamino, alkoxy, hydroxyl, halo, haloalkyl, cycloalkyl, aryl, arylalkyl, alkylaryl, haloalkylaryl, heterocyclyl, heteroaryl, alkoxyalkyl, alkylcarbonyl, and alkoxycarbonyl; and

R 4 and R 5 are selected as follows:

i) R 4 and R 5 are each alkyl; or

ii) R 4 and R 5 together with the nitrogen atom on which they are substituted form an unsubstituted heterocyclic ring.

7. The compound of claim 1 , wherein the compound is of Formula IB:

or a pharmaceutically acceptable salt thereof, wherein p is 0 to 3, q is 0 or 1; and Q 1 is amino, alkylamino, hydroxyl, alkoxy, or alkoxyalkyl.

8. The compound of claim 1 , wherein the compound is of Formula IC:

or a pharmaceutically acceptable salt thereof, wherein R 14 is hydrogen, alkyl, haloalkyl, aryl, arylalkyl, alkylaryl, haloalkylaryl, alkylcarbonyl, cycloalkyl, haloalkylaryl, heteroaryl, heterocyclyl or alkyloxycarbonyl; Q 1 is alkyl; and p is 0, 1 or 2.

9. The compound of claim 1 , wherein the compound is of Formula IG:

or a pharmaceutically acceptable salt thereof, wherein p is 0 to 3; Q 1 is amino, alkylamino, hydroxyl, alkoxy, or alkoxyalkyl; and R 4 and R 5 are each alkyl.

10. The compound of claim 1 , wherein the compound is of Formula IH:

or a pharmaceutically acceptable salt thereof, wherein R 14 is hydrogen, methyl, ethyl, isopropyl, trifluoromethyl, phenyl, methylcarbonyl, cyclohexyl, trifluoromethylphenyl, pyridinyl, pyrrolidinyl, piperidinyl or tert-butyloxycarbonyl; Q 1 is methyl; p is 0, 1 or 2; and R 4 and R 5 are each methyl.

11. A compound having Formula II:

or a pharmaceutically acceptable salt thereof; wherein where R 10 and R 11 are each independently hydrogen, halo, alkyl, haloalkyl, alkoxy, or hydroxyl;

R 8 and R 9 together with the nitrogen atom on which they are substituted form a substituted or unsubstituted heterocyclic ring, where substituents when present are selected from one or more Q 3 groups selected from alkyl, amino, alkylamino, alkoxy, hydroxyl, halo, haloalkyl, cycloalkyl, aryl, arylalkyl, alkylaryl, haloalkylaryl, heterocyclyl, heteroaryl, alkoxyalkyl, alkylcarbonyl, and alkoxycarbonyl;

R 12 is halo, alkyl, haloalkyl, alkoxy, or hydroxyl;

R 13 is hydroxyl or alkoxy;

r is 0 to 2; and

where Q 3 is optionally substituted with one, two or three groups selected from halo, alkyl, amino, alkoxy, hydroxyl, and haloalkyl.

12. The compound of claim 11 , wherein R 10 and R 11 are each independently hydrogen, halo or alkyl;

R 8 and R 9 together with the nitrogen atom on which they are substituted form a substituted or unsubstituted heterocyclic ring, where substituents when present are selected from one or more Q 3 groups selected from alkyl, amino, alkylamino, alkoxy, hydroxyl, halo, haloalkyl, cycloalkyl, aryl, arylalkyl, alkylaryl, haloalkylaryl, heterocyclyl, heteroaryl, alkoxyalkyl, alkylcarbonyl, and alkoxycarbonyl;

R 12 is halo or alkyl;

R 13 is hydroxyl or alkoxy; and

r is 0 or 1.

13. The compound of claim 12 , wherein R 8 and R 9 together with the nitrogen atom on which they are substituted form a substituted or unsubstituted 5 or 6 membered heterocyclic ring, where substituents when present are selected from one, two or three Q 3 groups selected from alkyl, amino, alkylamino, alkoxy, hydroxyl, halo, haloalkyl, cycloalkyl, aryl, arylalkyl, alkylaryl, haloalkylaryl, heterocyclyl, heteroaryl, alkoxyalkyl, alkylcarbonyl, and alkoxycarbonyl.

14. The compound of claim 13 , wherein R 8 and R 9 together with the nitrogen atom on which they are substituted form pyrrolidinyl, piperidinyl, piperazinyl or morpholinyl ring.

15. The compound of claim 11 , wherein R 10 and R 11 are each hydrogen.

16. The compound of claim 1 selected from:

7-((3S,4S)-3-methoxy-4-(methylamino)pyrrolidin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

3-(piperidin-1-ylsulfonyl)-7-(4-(pyridin-2-yl)piperazin-1-yl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-(4-cyclohexylpiperazin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-7-(4-(4-(trifluoromethyl)phenyl)piperazin-1-yl)-1,8-naphthyridin-4(1H)-one;

(R)-7-(3-methylpiperazin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-((3S,5R)-3,5-dimethylpiperazin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

(R)-7-(3-(dimethylamino)pyrrolidin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-(2-methylpyrrolidin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

3-(piperidin-1-ylsulfonyl)-7-(4-(pyrrolidin-1-yl)piperidin-1-yl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

(S)-7-(2-(methoxymethyl)pyrrolidin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

(R)-7-(2-(methoxymethyl)pyrrolidin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

(R)-7-(3-aminopyrrolidin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-(3-hydroxypyrrolidin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-(3-(diethylamino)pyrrolidin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-morpholino-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

tert-butyl 4-(5-oxo-6-(piperidin-1-ylsulfonyl)-8-(thiazol-2-yl)-5,8-dihydro-1,8-naphthyridin-2-yl)piperazine-1-carboxylate;

7-(4-methylpiperazin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-(4-acetylpiperazin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-(4-ethylpiperazin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-(4-isopropylpiperazin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-(piperazin-1-yl)-3-(piperidin-1-ylsulfonyl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

3-(piperidin-1-ylsulfonyl)-7-(pyrrolidin-1-yl)-1-(thiazol-2-yl)-1,8-naphthyridin-4(1H)-one;

7-((3S,4S)-3-methoxy-4-(methylamino)pyrrolidin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

N,N-dimethyl-4-oxo-7-(4-(pyridin-2-yl)piperazin-1-yl)-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

7-(4-cyclohexylpiperazin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-7-(4-(4-(trifluoromethyl)phenyl)piperazin-1-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

(R)—N,N-dimethyl-7-(3-methylpiperazin-1-yl)-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

7-((3S,5R)-3,5-dimethylpiperazin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

(R)-7-(3-(dimethylamino)pyrrolidin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

N,N-dimethyl-7-(2-methylpyrrolidin-1-yl)-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

N,N-dimethyl-4-oxo-7-(4-(pyrrolidin-1-yl)piperidin-1-yl)-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

(S)-7-(2-(methoxymethyl)pyrrolidin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

(R)-7-(2-(methoxymethyl)pyrrolidin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

(R)-7-(3-aminopyrrolidin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

7-(3-hydroxypyrrolidin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

7-(3-(diethylamino)pyrrolidin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

N,N-dimethyl-7-morpholino-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

tert-butyl 4-(6-(N,N-dimethylsulfamoyl)-5-oxo-8-(thiazol-2-yl)-5,8-dihydro-1,8-naphthyridin-2-yl)piperazine-1-carboxylate;

N,N-dimethyl-7-(4-methylpiperazin-1-yl)-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

7-(4-acetylpiperazin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

7-(4-ethylpiperazin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

7-(4-isopropylpiperazin-1-yl)-N,N-dimethyl-4-oxo-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide;

N,N-dimethyl-4-oxo-7-(piperazin-1-yl)-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide; and

N,N-dimethyl-4-oxo-7-(pyrrolidin-1-yl)-1-(thiazol-2-yl)-1,4-dihydro-1,8-naphthyridine-3-sulfonamide.

17. A pharmaceutical composition comprising a compound of claim 1 and a pharmaceutically acceptable carrier.

18. The compound of claim 11 selected from:

3-((3S,4S)-3-methoxy-4-(methylamino)pyrrolidin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

(S)-3-(3-(dimethylamino)pyrrolidin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

(S)-3-(3-aminopyrrolidin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-(3-methoxypyrrolidin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-(3-hydroxypyrrolidin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-(3-(diethylamino)pyrrolidin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

8-oxo-3-(pyrrolidin-1-yl)-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-(2-methylpyrrolidin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

(R)-3-(2-(methoxymethyl)pyrrolidin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

(S)-3-(2-(methoxymethyl)pyrrolidin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-(4-methylpiperazin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-(4-ethylpiperazin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-(4-acetylpiperazin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-(4-cyclohexylpiperazin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

8-oxo-3-(piperazin-1-yl)-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-((3S,5R)-3,5-dimethylpiperazin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

(R)-3-(3-methylpiperazin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

8-oxo-5-thiazol-2-yl)-3-(4-(4-trifluoromethyl)phenyl)piperazin-1-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-(4-isopropylpiperazin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

3-morpholino-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

8-oxo-3-(4-(pyridin-2-yl)piperazin-1-yl)-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid;

8-oxo-3-(4-(pyrrolidin-1-yl)piperidin-1-yl)-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid; and

3-(4-tert-butoxycarbonyl)piperazin-1-yl)-8-oxo-5-(thiazol-2-yl)-5,8-dihydropyrido[3,2-b]pyrazine-7-carboxylic acid.

19. A pharmaceutical composition comprising a compound of claim 11 and a pharmaceutically acceptable carrier.

Assignments (5)
RELEASE OF SECURITY INTEREST Recorded Nov 5, 2020
From: WESTERN ALLIANCE BANK
To: SUNESIS PHARMACEUTICALS, INC.
Reel/Frame 054335/0429 →
SECURITY INTEREST Recorded May 10, 2016
From: SUNESIS PHARMACEUTICALS, INC.
To: WESTERN ALLIANCE BANK
Reel/Frame 038655/0493 →
RELEASE OF SECURITY INTEREST Recorded Apr 1, 2016
From: OXFORD FINANCE LLC, AS COLLATERAL AGENT
To: SUNESIS PHARMACEUTICALS, INC.
Reel/Frame 038330/0382 →
SECURITY AGREEMENT Recorded May 7, 2012
From: SUNESIS PHARMACEUTICALS, INC.
To: OXFORD FINANCE LLC, AS COLLATERAL AGENT
Reel/Frame 028169/0528 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Dec 16, 2010
From: SUDHAKAR, ANANTHA
To: SUNESIS PHARMACEUTICALS, INC.
Reel/Frame 025510/0011 →