Microbial engineering for the production of chemical and pharmaceutical products from the isoprenoid pathway

1. A method for increasing terpenoid production in a cell that produces one or more terpenoids, comprising

providing an Escherichia coli ( E. coli ) that produces isopentyl pyrophosphate (IPP) and dimethylallyl pyrophospate (DMAPP) through an upstream methylerythritol pathway (MEP) and converts the IPP and DMAPP to a terpenoid through a recombinantly expressed downstream terpenoid synthesis pathway; and

culturing the E. coli to produce the terpenoid, wherein the accumulation of indole in the culture is controlled to below 100 mg/L to thereby increase terpenoid production.

2. The method of claim 1 , wherein accumulation of indole in the culture is controlled by balancing the upstream MEP pathway with the downstream terpenoid synthesis pathway.

3. The method of claim 1 , wherein the step of culturing comprises removing the accumulated indole.

4. The method of claim 1 , wherein the one or more terpenoids is a monoterpenoid, a sesquiterpenoid, a diterpenoid, a triterpenoid or a tetraterpenoid.

5. The method of claim 4 , wherein the one or more terpenoids is taxadiene or a taxol precursor.

6. The method of claim 1 further comprising measuring the amount or concentration of indole in the culture.

7. The method of claim 6 , wherein the method comprises measuring the amount or concentration of indole two or more times.

8. The method of claim 6 , wherein the measured amount or concentration of indole is used to guide a process of producing one or more terpenoids.

9. The method of claim 6 , wherein the measured amount or concentration of indole is used to guide strain construction.

10. The method of claim 1 , wherein the method amplifies metabolic flux through IPP and DMAPP, and at least one intermediate selected from geranyl diphosphate (GPP), geranylgeranyl diphosphate (GGPP), farnesyl diphosphate (FPP), and farnesyl geranyl diphosphate (FGPP).

11. The method of claim 1 , wherein the E. coli recombinantly expresses a geranylgeranyl diphosphate synthase (GGPS).

12. The method of claim 1 , wherein the E. coli has an amplified copy number of the dxs, idi, ispD and ispF genes of the MEP pathway.

13. The method of claim 1 , wherein the terpenoid is geraniol, citronellol, nootkatone, cineol, limonene, eleutherobin, sarcodictyin, a pseudopterosin, a ginkgolide, a stevioside, Rebaudioside A, sclareol, labdenediol, levopimaradiene, sandracopimaradiene or isopemaradiene.

14. A method for producing a terpenoid, comprising

culturing an Escherichia coli ( E. coli ) that produces isopentyl pyrophosphate (IPP) and dimethylallyl pyrophospate (DMAPP) through an upstream methylerythritol pathway (MEP) and which converts the IPP and DMAPP to a terpenoid through a recombinantly expressed downstream terpenoid synthesis pathway, wherein the E. coli produces the terpenoid without accumulating indole in the culture media at greater than 100 mg/L;

wherein the E. coli has an amplified copy number of one or more of dxs, idi, ispD, and ispF, and wherein the terpenoid is selected from taxadiene or taxol precursor, citronellol, geraniol, nootkatone, cineol, limonene, eleutherobin, sarcodictyin, a pseudopterosin, a ginkgolide, a stevioside, Rebaudioside A, sclareol, labdenediol, levopimaradiene, sandracopimaradiene and isopemaradiene; and

recovering the terpenoid.