IP Library Granted Patent US 9,200,314
Granted Patent B2
US 9,200,314 · App. 13/186,941 · Granted Dec 1, 2015

Synthetic siRNA detection method

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Quick Facts
Patent No.
US 9,200,314
App. No.
13/186,941
Granted
Dec 1, 2015
Kind
B2
Abstract

A method for accurately and easily detecting a synthetic siRNA, for example, a siRNA in which the 3′ end is DNA, and a kit used for the method are provided. The present invention relates to a method for detecting a siRNA in which the 3′ end is DNA, comprising: (a) adding polydeoxyadenosine to the 3′ DNA end of at least one strand of the siRNA to be detected to produce a polydeoxyadenosine-added RNA; (b) annealing a polydeoxythymidine primer having a tag sequence at its 5′ side to the polydeoxyadenosine-added RNA and synthesizing DNA from the primer by a reverse transcription; and (c) detecting the DNA synthesized in (b).

Claims (8)

1. A method for detecting a synthetic siRNA in which the 3′ end is a dT 1-4 nucleotide sequence, comprising:

(a) adding polydeoxyadenosine to the 3′ DNA end of at least one strand of the siRNA to be detected to produce a polydeoxyadenosine-added RNA;

(b) annealing a polydeoxythymidine primer having a tag sequence at its 5′ end to the polydeoxyadenosine-added RNA and synthesizing DNA from the primer by reverse transcription; and

(c) detecting the DNA synthesized in (b), wherein the polydeoxythymidine primer comprises in 3′ to 5′ direction a dT 1-4 nucleotide sequence, a polydeoxythymidine sequence, and the tag sequence, wherein the tag sequence distinguishes a polydeoxythymidine primer having the tag sequence at its 5′ end from a polydeoxythymidine primer without the tag sequence, and wherein the step of detecting is performed by a nucleic acid amplification in (c) using the synthesized DNA as a template, and using a first primer comprising a sequence homologous to the tag sequence and a second primer comprising a sequence homologous to the strand of the siRNA to which the polydeoxyadenosine is added.

2. The method of claim 1 , further comprising the step of quantifying the synthesized DNA to calculate an amount of the siRNA to which polydeoxyadenosine was added in (a).

3. The method of claim 1 , wherein the polydeoxyadenosine is added in step (a) by a terminal deoxynucleotidyl transferase.

4. The method of claim 1 , wherein the tag sequence is a universal tag sequence.

5. The method of claim 1 wherein 20 fM to 2 nM of siRNA can be measured.

Assignments (2)
CHANGE OF ADDRESS Recorded Jun 24, 2016
From: TAKARA BIO INC.
To: TAKARA BIO INC.
Reel/Frame 039152/0834 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 21, 2011
From: YANAGI, SATOSHI; KOBAYASHI, EIJI; UEMORI, TAKASHI; MUKAI, HIROYUKI
To: TAKARA BIO INC.
Reel/Frame 026625/0874 →