IP Library Granted Patent US 8,748,438
Granted Patent B2
US 8,748,438 · App. 13/340,409 · Granted Jun 10, 2014

Inhibitors of Bruton's tyrosine kinase

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Quick Facts
Patent No.
US 8,748,438
App. No.
13/340,409
Granted
Jun 10, 2014
Kind
B2
Abstract

Disclosed herein are compounds that form covalent bonds with Bruton's tyrosine kinase (Btk). Also described are irreversible inhibitors of Btk, such as those having the structure of Formula (A) Methods for the preparation of the compounds are disclosed. Also disclosed are pharmaceutical compositions that include the compounds. Methods of using the Btk inhibitors are disclosed, alone or in combination with other therapeutic agents, for the treatment of autoimmune diseases or conditions, heteroimmune diseases or conditions, cancer, including lymphoma, and inflammatory diseases or conditions.

Claims (48)

1. A method for treating Sjogren's syndrome comprising administering to an individual in need thereof an irreversible inhibitor of Bruton's tyrosine kinase (Btk), wherein the irreversible inhibitor is a compound having the structure of Formula (A)

wherein:

A is N;

R 1 is L 2 -(substituted or unsubstituted heteroaryl), or L 2 -(substituted or unsubstituted aryl), where L 2 is a bond, O, S, —S(═O), —S(═O) 2 , C(═O), -(substituted or unsubstituted C 1 -C 6 alkylene), or -(substituted or unsubstituted C 2 -C 6 alkenylene);

R 2 and R 3 are independently selected from H or lower alkyl;

R 4 is L 3 -X-L 4 -G, wherein,

L 3 is optional, and when present is an optionally substituted or unsubstituted alkylene, optionally substituted or unsubstituted cycloalkylene, optionally substituted or unsubstituted alkenylene, or optionally substituted or unsubstituted alkynylene;

X is optional, and when present is O, —C(═O), S, —S(═O), —S(═O) 2 , —NH, —NR 9 , —NHC(O), —C(O)NH, —NR 9 C(O), —C(O)NR 9 , —S(═O) 2 NH, —NHS(═O) 2 , —S(═O) 2 NR 9 —, —NR 9 S(═O) 2 , —OC(O)NH—, —NHC(O)O—, —OC(O)NR 9 —, —NR 9 C(O)O—, —CH=NO—, —ON═CH—, —NR 10 C(O)NR 10 —, heteroarylene, arylene, —NR 10 C(═NR 11 )NR 10 —, —NR 10 C(═NR 11 )—, —C(═NR 11 )NR 10 —, —OC(═NR 11 )—, or —C (═NR 11 )O—;

L 4 is optional, and when present is a substituted or unsubstituted alkylene, substituted or unsubstituted cycloalkylene, substituted or unsubstituted alkenylene, substituted or unsubstituted alkynylene, substituted or unsubstituted arylene, substituted or unsubstituted heteroarylene, or substituted or unsubstituted heterocyclene;

or L 3 , X and L 4 taken together form a nitrogen containing heterocyclic ring;

G is

 wherein,

R 6 , R 7 and R 8 are independently selected from among H, lower alkyl or substituted lower alkyl, lower heteroalkyl or substituted lower heteroalkyl, substituted or unsubstituted lower cycloalkyl, and substituted or unsubstituted lower heterocycloalkyl;

R 9 is selected from among H, substituted or unsubstituted lower alkyl, and substituted or unsubstituted lower cycloalkyl;

each R 10 is independently H, substituted or unsubstituted lower alkyl, or substituted or unsubstituted lower cycloalkyl; or

two R 10 groups can together form a 5-, 6-, 7-, or 8-membered heterocyclic ring; or

R 10 and R 11 can together form a 5-, 6-, 7-, or 8-membered heterocyclic ring; and

R 11 is selected from H, —S(═O) 2 R 8 , —S(═O) 2 NH 2 , —C(O)R 8 , —CN, —NO 2 , heteroaryl, or heteroalkyl; or a pharmaceutically acceptable solvate, hydrate, or salts thereof.

2. The method of claim 1 , wherein the inhibitor of Btk is a selective, irreversible inhibitor of Btk.

3. The method of claim 1 , wherein the inhibitor of Btk forms a covalent bond with a Bruton's tyrosine kinase (Btk).

4. The method of claim 3 , wherein the covalent bond is formed from a functional group on the inhibitor of Btk and the functional group is capable of covalently binding a cysteine residue of a Bruton's tyrosine kinase (Btk).

5. The method of claim 4 , wherein the cysteine residue of a Bruton's tyrosine kinase is Cys 481.

6. The method of claim 1 , wherein the inhibitor of Btk forms a covalent bond with an amino acid residue of a Bruton's tyrosine kinase (Btk).

7. The method of claim 1 , wherein the inhibitor of Btk forms a covalent bond with a cysteine residue of a Bruton's tyrosine kinase (Btk).

8. The method of claim 1 , wherein the inhibitor of Btk forms a covalent bond with a cysteine 481 residue of a Bruton's tyrosine kinase (Btk).

9. The method of claim 1 , wherein the inhibitor of Btk selectively binds to a Bruton's tyrosine kinase.

10. The method of claim 1 , wherein the inhibitor of Btk has an IC 50 of less than 1 μM.

11. The method of claim 1 , wherein the inhibitor of Btk has an IC 50 of less than 0.25 μM.

12. The method of claim 1 , wherein the inhibitor of Btk is administered orally.

13. The method of claim 1 , wherein the inhibitor has the structure of Formula (I):

wherein:

L a is CH 2 , O, NH or S;

Ar is a substituted or unsubstituted aryl, or a substituted or unsubstituted heteroaryl;

Y is an optionally substituted group selected from among alkylene, heteroalkylene, cycloalkylene, heterocycloalkylene, arylene, and heteroarylene;

Z is C(═O), OC(═O), NHC(═O), C(═S), S(═O) x , OS(═O) x , or NHS(═O) x , where x is 1 or 2;

R 6 and R 8 are H and R 7 is optionally substituted C 1 -C 4 heteroalkyl, or optionally substituted C 2 -C 6 heterocycloalkyl; or

R 7 and R 8 are H and R 6 is substituted or unsubstituted C 1 -C 4 alkyl, substituted or unsubstituted C 1 -C 4 heteroalkyl, C 1 -C 6 alkoxyalkyl, C 1 -C 6 alkylaminoalkyl, substituted or unsubstituted C 3 -C 6 cycloalkyl, substituted or unsubstituted C 2 -C 8 heterocycloalkyl, C 1 -C 4 alkyl(aryl), C 1 -C 4 alkyl(heteroaryl), C 1 -C 4 alkyl(C 3 -C 8 cycloalkyl), or C 1 -C 4 alkyl(C 2 -C 8 heterocycloalkyl); or

R 7 and R 8 are substituted or unsubstituted C 1 -C 4 alkyl, substituted or unsubstituted C 1 -C 4 heteroalkyl, substituted or unsubstituted C 3 -C 6 cycloalkyl, or substituted or unsubstituted C 2 -C 6 heterocycloalkyl, and R 6 is H, substituted or unsubstituted C 1 -C 4 alkyl, substituted or unsubstituted C 1 -C 4 heteroalkyl, C 1 -C 6 alkoxyalkyl, C 1 -C 6 alkylaminoalkyl, substituted or unsubstituted C 3 -C 6 cycloalkyl, substituted or unsubstituted C 2 -C 8 heterocycloalkyl, C 1 -C 4 alkyl(aryl), C 1 -C 4 alkyl(heteroaryl), C 1 -C 4 alkyl(C 3 -C 8 cycloalkyl), or C 1 -C 4 alkyl(C 2 -C 8 heterocycloalkyl); or

R 7 and R 8 taken together form a bond and R 6 is optionally substituted C 1 -C 4 heteroalkyl, or optionally substituted C 2 -C 6 heterocycloalkyl; or a pharmaceutically acceptable solvate, pharmaceutically acceptable hydrate, or pharmaceutically acceptable salt thereof.

14. The method of claim 1 wherein R 2 and R 3 are each independently H.

15. The method of claim 1 wherein R 1 is a substituted phenyl.

16. The method of claim 1 wherein R 4 is L 3 -X-L 4 -G wherein L 3 , X and L 4 taken together form a nitrogen containing heterocyclic ring.

17. The method of claim 1 wherein G is

18. The method of claim 1 wherein R 6 , R 7 , and R 8 are each independently H.

19. The method of claim 1 wherein the compound has the structure

or a pharmaceutically acceptable solvate, hydrate, or salt thereof.

20. A method for treating Sjogren's syndrome comprising administering to an individual in need thereof an irreversible inhibitor of Bruton's tyrosine kinase (Btk), wherein the irreversible inhibitor is a compound having the structure of

or a pharmaceutically acceptable solvate, hydrate, or salt thereof.

Assignments (5)
CORRECTIVE ASSIGNMENT TO CORRECT THE CONVEYING PARTY DATA PREVIOUSLY RECORDED ON REEL 036126 FRAME 0377. ASSIGNOR(S) HEREBY CONFIRMS THE MERGER. Recorded May 17, 2016
From: OXFORD AMHERST CORPORATION; PHARMACYCLICS, INC.
To: PHARMACYCLICS, INC.
Reel/Frame 038722/0776 →
CORRECTIVE ASSIGNMENT TO CORRECT THE CONVEYING PARTY DATA PREVIOUSLY RECORDED ON REEL 036126 FRAME 0398. ASSIGNOR(S) HEREBY CONFIRMS THE MERGER AND CHANGE OF NAME. Recorded May 17, 2016
From: PHARMACYCLICS, INC.; OXFORD AMHERST LLC
To: PHARMACYCLICS LLC
Reel/Frame 038722/0849 →
MERGER Recorded Jul 16, 2015
From: OXFORD AMHERST CORPORATION
To: PHARMACYCLICS, INC.
Reel/Frame 036126/0377 →
MERGER AND CHANGE OF NAME Recorded Jul 16, 2015
From: PHARMACYCLICS, INC.; OXFORD AMHERST LLC
To: PHARMACYCLICS LLC
Reel/Frame 036126/0398 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 3, 2012
From: HONIGBERG, LEE; PAN, ZHENGYING; VERNER, ERIK
To: PHARMACYCLICS, INC.
Reel/Frame 027470/0924 →