Biological data networks and methods therefor
A system and method of transmitting and receiving packetized biological sequence data is disclosed. The method includes receiving, at a network interface of a node of a network, a data packet including a first header containing network routing information, a second header containing header information pertaining to the biological sequence data, and a payload containing a compressed version of the biological sequence data. The method further includes extracting at least the compressed version of the biological sequence data from the data packet. In addition, the method includes storing the compressed version of the biological sequence data within a memory of the node.
1. A method for packetized transmission of biological sequence data, the method comprising:
generating a data packet including a first header containing network routing information, a second header containing header information relating to a plurality of biological characteristics of the biological sequence data wherein each of the plurality biological characteristics is linked to one or more sequence locations or segments of the biological sequence data, and a payload containing an encoded representation of differences between the biological sequence data and a reference sequence;
providing the data packet to a network interface; and
transmitting the data packet to a node of a network wherein the biological sequence data comprises DNA sequence data and wherein the header information of the second header comprises information relating to mutations within the DNA sequence data.
2. A method for packetized transmission of biological sequence data, the method comprising:
generating a data packet including a first header containing network routing information, a second header containing header information relating to a plurality of biological characteristics of the biological sequence data wherein each of the plurality biological characteristics is linked to one or more sequence locations or segments of the biological sequence data, and a payload containing an encoded representation of differences between the biological sequence data and a reference sequence;
providing the data packet to a network interface; and
transmitting the data packet to a node of a network wherein the biological sequence data comprises DNA sequence data and wherein the payload further includes embedded data relating to the DNA sequence data.
3. The method of claim 2 wherein the embedded data comprises correlative information relating to mutations within the DNA sequence data.
4. The method of claim 3 wherein the correlative information includes pharmacological information.
5. The method of claim 3 wherein the correlative information includes clinical result information.
6. A method of receiving packetized biological sequence data, the method comprising:
receiving, at a network interface of a node of a network, a data packet including a first header containing network routing information, a second header containing header information relating to a plurality of biological characteristics of the biological sequence data wherein each of the plurality biological characteristics is linked to one or more sequence locations or segments of the biological sequence data, and a payload containing a compressed version of the biological sequence data generated with respect to a reference sequence;
extracting at least the compressed version of the biological sequence data from the data packet; and
storing the compressed version of the biological sequence data within a memory of the node wherein the biological sequence data comprises DNA sequence data and wherein the header information of the second header comprises information relating to mutations within the DNA sequence data.
7. A method of receiving packetized biological sequence data, the method comprising:
receiving, at a network interface of a node of a network, a data packet including a first header containing network routing information, a second header containing header information relating to a plurality of biological characteristics of the biological sequence data wherein each of the plurality biological characteristics is linked to one or more sequence locations or segments of the biological sequence data, and a payload containing a compressed version of the biological sequence data generated with respect to a reference sequence;
extracting at least the compressed version of the biological sequence data from the data packet; and
storing the compressed version of the biological sequence data within a memory of the node wherein the biological sequence data comprises DNA sequence data and wherein the payload further includes embedded data relating to the DNA sequence data.
8. The method of claim 7 wherein the embedded data comprises correlative information relating to mutations within the DNA sequence data.
9. The method of claim 8 wherein the correlative information includes pharmacological information.
10. The method of claim 8 wherein the correlative information includes clinical result information.
11. A network node, comprising:
a network interface;
a packet generator communicatively coupled to the network interface, the packet generator being configured to generate a data packet including a first header containing network routing information, a second header containing header information relating to a plurality of biological characteristics of biological sequence data wherein each of the plurality biological characteristics is linked to one or more sequence locations or segments of the biological sequence data, and a payload containing an encoded representation of differences between the biological sequence data and reference sequence; and
a transmit controller configured to control transmission of the data packet from the network interface to a node of a network wherein the biological sequence data comprises DNA sequence data and wherein the header information of the second header comprises information relating to mutations within the DNA sequence data.
12. A network node, comprising:
a network interface;
a packet generator communicatively coupled to the network interface, the packet generator being configured to generate a data packet including a first header containing network routing information, a second header containing header information relating to a plurality of biological characteristics of biological sequence data wherein each of the plurality biological characteristics is linked to one or more sequence locations or segments of the biological sequence data, and a payload containing an encoded representation of differences between the biological sequence data and a reference sequence; and
a transmit controller configured to control transmission of the data packet from the network interface to a node of a network wherein the biological sequence data comprises DNA sequence data and wherein the payload further includes embedded data relating to the DNA sequence data.
13. The network node of claim 12 wherein the embedded data comprises correlative information relating to mutations within the DNA sequence data.
14. The network node of claim 13 wherein the correlative information includes pharmacological information.
15. The network node of claim 13 wherein the correlative information includes clinical result information.
16. A network node, comprising:
a network interface configured to receive a data packet including a first header containing network routing information, a second header containing header information relating to a plurality of biological characteristics of the biological sequence data wherein each of the plurality biological characteristics is linked to one or more sequence locations or segments of the biological sequence data, and a payload containing a compressed version of the biological sequence data generated with respect to a reference sequence wherein the biological sequence data comprises DNA sequence data and wherein the header information of the second header comprises information relating to mutations within the DNA sequence data;
an input packet processor communicatively coupled to the network interface, the input packet processor being configured to extract at least the compressed version of the biological sequence data from the data packet; and
a memory in which is stored the compressed version of the biological sequence data.
17. A network node, comprising:
a network interface configured to receive a data packet including a first header containing network routing information, a second header containing header information relating to a plurality of biological characteristics of biological sequence data wherein each of the plurality biological characteristics is linked to one or more sequence locations or segments of the biological sequence data, and a payload containing a compressed version of the biological sequence data generated with respect to a reference sequence wherein the biological sequence data comprises DNA sequence data and wherein the payload further includes embedded data relating to the DNA sequence data;
an input packet processor communicatively coupled to the network interface, the input packet processor being configured to extract at least the compressed version of the biological sequence data from the data packet; and
a memory in which is stored the compressed version of the biological sequence data.
18. The network node of claim 17 wherein the embedded data comprises correlative information relating to mutations within the DNA sequence data.
19. The network node of claim 18 wherein the correlative information includes pharmacological information.
20. The network node of claim 18 wherein the correlative information includes clinical result information.