IP Library Granted Patent US 9,144,557
Granted Patent B2
US 9,144,557 · App. 13/501,622 · Granted Sep 29, 2015

Hematopoietic growth factor mimetic small molecule compounds and their uses

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Quick Facts
Patent No.
US 9,144,557
App. No.
13/501,622
Granted
Sep 29, 2015
Kind
B2
Abstract

The present embodiments relate to compounds with physiological effects, such as the activation of hematopoietic growth factor receptors. The present embodiments also relate to use of the compounds to treat a variety of conditions, diseases and ailments such as hematopoietic conditions and disorders.

Claims (71)

1. A compound of Formula VIII:

and pharmaceutically acceptable salts thereof;

wherein:

each E is separately selected from the group consisting of —CR 10a - and N (nitrogen);

each R 10a is separately selected from the group consisting of H (hydrogen), halogen, cyano, C 1 -C 6 alkyl optionally substituted with up to five fluoro, C 1 -C 6 alkoxy optionally substituted with up to five fluoro, C 2 -C 6 alkenyl optionally substituted with up to five fluoro, C 2 -C 6 alkynyl optionally substituted with up to five fluoro, C 3 -C 7 cycloalkyl optionally substituted with up to five fluoro, and C 3 -C 7 cycloalkenyl optionally substituted with up to five fluoro;

R 10b is selected from the group consisting of R 10bb , H (hydrogen), halogen, cyano, C 1 -C 6 alkyl optionally substituted with up to five fluoro, C 1 -C 6 alkoxy optionally substituted with up to five fluoro, C 2 -C 6 alkenyl optionally substituted with up to five fluoro, C 2 -C 6 alkynyl optionally substituted with up to five fluoro, C 3 -C 7 cycloalkyl optionally substituted with up to five fluoro, and C 3 -C 7 cycloalkenyl optionally substituted with up to five fluoro;

R 10c is selected from the group consisting of H (hydrogen), R U SO 2 —, R U C(═O)—, C 1 -C 6 alkyl optionally substituted with up to five fluoro, and C 3 -C 7 cycloalkyl optionally substituted with up to five fluoro, or R 10c is R 10c when R 10b is R 10bb ;

R 10cc and R 10bb together with the atoms to which they are attached is a five-membered heteroaryl optionally substituted with one or more substituents each separately selected from the group consisting of halogen, cyano, C 1 -C 6 alkyl optionally substituted with up to five fluoro, C 1 -C 6 alkoxy optionally substituted with up to five fluoro, C 1 -C 6 alkylC(═O)— and C 3 -C 7 cycloalkylC(═O)—;

A 4 is selected from the group consisting of C 3 -C 7 cycloalkenyl, C 3 -C 7 cycloalkyl, C 1 -C 6 alkyl, C 1 -C 6 heteroalkyl, C 2 -C 6 alkenyl, C 1 -C 6 alkoxy, —(CH 2 ) m NR P R L , heterocycle, polycyclic heterocyclyl, aryl, and heteroaryl, said C 3 -C 7 cycloalkenyl, C 3 -C 7 cycloalkyl, C 1 -C 6 alkyl, C 1 -C 6 heteroalkyl, C 2 -C 6 alkenyl, heterocycle, polycyclic heterocyclyl, aryl, and heteroaryl, each optionally substituted with one or more substituents selected from the group consisting of R 1 , R 2 , and R 3 ;

G 4 is selected from the group consisting of polycyclic heterocyclyl, phenyl, and heteroaryl, each optionally substituted with one or more substituents selected from the group consisting of R 4 , R 5 , and R 6 ;

A 5 is selected from the group consisting of polycyclic heterocyclyl, aryl and heteroaryl, each optionally substituted with one or more substituents selected from the group consisting of R 1 , R 2 , and R 3 ;

each R B is separately selected from the group consisting of hydrogen, an optionally substituted C 1 -C 6 alkyl, an optionally substituted C 2 -C 6 alkenyl, and an optionally substituted C 3 -C 7 cycloalkyl;

each —NR E R F is separately selected, wherein each R E is independently selected from the group consisting of hydrogen and an optionally C 1 -C 6 alkyl, and each R F is independently selected from the group consisting of aryl and heteroaryl, said aryl and heteroaryl in the definition of R F are each optionally substituted with halogen, cyano, C 1 -C 6 alkyl, C 1 -C 6 alkoxy, C 3 -C 7 cycloalkyl, C 3 -C 7 cycloalkenyl, —C(═O)NR N R O , —OC(═O)NR N R O , —NHC(═O)NR N R O , —O(CH 2 ) q NR N R O , —NH(CH 2 ) q NR N R O , —(CH 2 ) p NR N R O , an optionally substituted aryl and an optionally substituted heteroaryl, and said aryl and heteroaryl in the definition of R F are each further optionally fused with an optionally substituted nonaromatic heterocycle or an optionally substituted nonaromatic carbocycle;

R G is selected from the group consisting of C 3 -C 6 cycloalkyl, C 3 -C 8 cycloalkenyl, C 1 -C 6 heteroalkyl, C 1 -C 6 heteroalkenyl, C 1 -C 6 heteroalkynyl, heterocycle, aryl, and heteroaryl, each optionally substituted with one or more substituents selected from the group consisting of R 4 , R 5 , and R 6 , said aryl and heteroaryl in the definition of R G are each further optionally fused with an optionally substituted nonaromatic heterocycle or an optionally substituted nonaromatic carbocycle, or R G is —OR L or —NR P R L ;

R H is selected from the group consisting of hydrogen, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 3 -C 7 cycloalkyl, and C 1 -C 3 haloalkyl, or —NR G R H is an optionally substituted non-aromatic heterocycle linked through a ring nitrogen atom;

each R 1 is separately selected from the group consisting of halogen, cyano, an optionally substituted C 1 -C 6 alkyl, an optionally substituted C 1 -C 6 alkoxy, an optionally substituted C 2 -C 6 alkenyl, an optionally substituted C 2 -C 6 alkynyl, an optionally substituted C 3 -C 7 cycloalkyl, optionally substituted C 3 -C 7 cycloalkenyl, an optionally substituted C 1 -C 6 haloalkyl, an optionally substituted C 1 -C 6 heteroalkyl, an optionally substituted aryl, and an optionally substituted heteroaryl;

each R 2 is separately selected from the group consisting of halogen, —O(CH 2 ) m OR I , —(CH 2 ) m OR I , —NR J R K , —(CH 2 ) m SR I , —C(═O)R L , —(CH 2 ) m R L , an optionally substituted C 1 -C 6 alkyl, an optionally substituted C 1 -C 6 alkoxy, an optionally substituted C 2 -C 6 alkenyl, an optionally substituted C 1 -C 6 haloalkyl, an optionally substituted C 1 -C 6 heteroalkyl, and an optionally substituted C 3 -C 7 cycloalkyl where said C 3 -C 7 cycloalkyl is further optionally fused with aryl or heteroaryl;

each R 3 is separately selected from the group consisting of halogen, —(CH 2 ) m OR G , —NR L C(═O)R M , —NR L C(═O)OR M , —NR L C(═O)NR N R O , —NR N R O , —(CH 2 ) m S(O) 0-2 0, —(CH 2 ) m NHS(O) 0-2 R M , —(CH 2 ) m NO 2 , —(CH 2 ) m CN, —(CH 2 ) m R P , C 1 -C 6 alkyl C 1 -C 6 alkoxy, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 3 -C 7 cycloalkyl, C 1 -C 6 haloalkyl, heterocycle, aryl, polycyclic heterocyclyl, and heteroaryl, said heterocycle, aryl polycyclic heterocyclyl, and heteroaryl in the definition of R 3 are each optionally substituted with halogen, hydroxy, cyano, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 alkoxy, —C(═O)OR M , or —NR J R K ;

each R 4 is separately selected from the group consisting of halogen, cyano, an optionally substituted C 1 -C 6 alkyl, an optionally substituted C 1 -C 6 alkoxy, an optionally substituted C 2 -C 6 alkenyl, an optionally substituted C 2 -C 6 alkynyl, an optionally substituted C 3 -C 7 cycloalkyl, an optionally substituted C 1 -C 6 haloalkyl, an optionally substituted C 1 -C 6 heteroalkyl, an optionally substituted aryl, and an optionally substituted heteroaryl;

each R 5 is separately selected from the group consisting of halogen, —O(CH 2 ) m OR I , —(CH 2 ) m OR I , —NR J R K , —(CH 2 ) m SR I , —(CH 2 ) m C(═O)R L , —(CH 2 ) m R L , an optionally substituted C 1 -C 6 alkyl, an optionally substituted C 1 -C 6 alkoxy, an optionally substituted C 2 -C 6 alkenyl, an optionally substituted C 3 -C 7 cycloalkyl, an optionally substituted C 1 -C 6 haloalkyl, and an optionally substituted C 1 -C 6 heteroalkyl;

each R 6 is separately selected from the group consisting of halogen, —(CH 2 ) m OR G , —NR L C(═O)R M , —NR L C(═O)OR M , —NR L C(═O)NR N R O , —NR N R O , —(CH 2 ) m S(O) 0-2 O, —(CH 2 ) m NHS(O) 0-2 R M , —(CH 2 ) m NO 2 , —(CH 2 ) m CN, —(CH 2 ) m R P , C 1 -C 6 alkyl, C 1 -C 6 alkoxy, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 3 -C 7 cycloalkyl, C 1 -C 6 haloalkyl, C 1 -C 6 heteroalkyl, heterocycle, aryl, polycyclic heterocyclyl, and heteroaryl, said heterocycle, aryl, polycyclic heterocyclyl, and heteroaryl in the definition of R 6 are each optionally substituted with halogen, cyano, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 alkoxy, —C(═O)OR M , or —NR J R K ;

each R I is separately selected from the group consisting of hydrogen, C 1 -C 6 alkyl, C 2 -C 4 alkenyl, C 2 -C 4 alkynyl, C 3 -C 7 cycloalkyl, C 1 -C 6 haloalkyl, C 1 -C 6 heteroalkyl, and C 1 -C 6 heterohaloalkyl;

each —NR J R K is separately selected, wherein R J and R K are each independently selected from the group consisting of hydrogen, C 1 -C 6 alkyl optionally substituted with up to 5 fluoro, —(CH 2 ) m OR JA , —(CH 2 ) m NR JB R JC , —(CH 2 ) m R R , C 3 -C 7 cycloalkyl, heterocycle, aryl and heteroaryl, said C 3 -C 7 cycloalkyl, heterocycle, aryl and heteroaryl in the definition of R J and R K are each independently optionally substituted with one or more substituents selected from the group consisting of halo, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 alkoxy, aryl and heteroaryl, said aryl and heteroaryl substituent off of R J and R K are each optionally substituted with one or more halo, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 alkoxy, or —(CH 2 ) m NR KA R KB ; or —NR J R K is an optionally substituted non-aromatic heterocycle linked through a ring nitrogen atom;

each R JA is independently selected from the group consisting of hydrogen, C 1 -C 6 alkyl, and C 1 -C 6 haloalkyl;

each —NR JB R JC is separately selected, wherein R JB and R JC are each independently selected from the group consisting of hydrogen, C 1 -C 6 alkyl, and C 1 -C 6 haloalkyl;

each —NR KA R KB is separately selected, wherein R KA and R KB are each independently selected from the group consisting of hydrogen, C 1 -C 6 alkyl, and C 1 -C 6 haloalkyl;

each R M is independently selected from the group consisting of hydrogen, an optionally substituted C 1 -C 6 alkyl, an optionally substituted C 2 -C 4 alkenyl, an optionally substituted C 2 -C 4 alkynyl, an optionally substituted C 3 -C 7 cycloalkyl, an optionally substituted C 3 -C 7 cycloalkenyl, and —(CH 2 ) m R P ;

each —NR N R O is separately selected, wherein R N and R O are each independently selected from the group consisting of hydrogen, —(CH 2 ) m NR NA R NB , aryl and heteroaryl, said aryl and heteroaryl in the definition of R N and R O are each independently optionally substituted with one or more substituents selected from the group consisting of —(CH 2 ) m NR OA R OB , halo, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 alkoxy, aryl and heteroaryl, said aryl and heteroaryl substituent off of R N and R O are each optionally substituted with one or more halo, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 alkoxy, or —NR NA R NB ,

each —NR NA R NB is separately selected, wherein R NA and R NB are each independently selected from the group consisting of hydrogen, C 1 -C 6 alkyl, and C 1 -C 6 haloalkyl;

each —NR OA R OB is separately selected, wherein R OA and R OB are each independently selected from the group consisting of hydrogen, C 1 -C 6 alkyl, and C 1 -C 6 haloalkyl;

each R P is independently selected from the group consisting of hydrogen and C 1 -C 6 alkyl;

each R L is independently selected from the group consisting of C 3 -C 7 cycloalkyl, optionally substituted C 1 -C 6 alkyl, optionally substituted C 1 -C 6 alkoxy, —(CH 2 ) m OR LA , (CH 2 ) m NR LB R LC , aryl and heteroaryl, said aryl and heteroaryl in the definition of R L are each independently optionally substituted with one or more substituents selected from the group consisting of halo, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 alkoxy, —(CH 2 ) m NR LD R LE , aryl and heteroaryl, said aryl and heteroaryl substituent off of R L are each optionally substituted with one or more halo, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, C 1 -C 6 alkoxy, or —(CH 2 ) m NR LF R LG ;

each R LA is independently selected from the group consisting of hydrogen, C 1 -C 6 alkyl, and C 1 -C 6 haloalkyl;

R LB and R LC are each independently selected from the group consisting of hydrogen, C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, and C 1 -C 6 heteroalkenyl, said C 1 -C 6 alkyl, C 1 -C 6 haloalkyl, and C 1 -C 6 heteroalkenyl each optionally substituted with one or more halogen, cyano, or —(CH 2 ) m C(═O)OH; or —NR LB R LC is an optionally substituted non-aromatic heterocycle linked through a ring nitrogen atom;

each —NR LD R LE is separately selected, wherein R LD and R LE are each independently selected from the group consisting of hydrogen, aryl, heteroaryl, and optionally substituted C 1 -C 6 alkyl, said aryl and heteroaryl in the definition of R LD and R LE are each optionally substituted with C 1 -C 6 alkyl or C 1 -C 6 alkoxy; or —NR LD R LE is an optionally substituted non-aromatic heterocycle linked through a ring nitrogen atom;

each —NR LF R LG is separately selected, wherein R LF and R LG are each independently selected from the group consisting of hydrogen, and C 1 -C 6 alkyl; or —NR LF R LG is an optionally substituted non-aromatic heterocycle linked through a ring nitrogen atom;

R R is selected from the group consisting of C 1 -C 6 alkyl, an optionally substituted aryl, and an optionally substituted heteroaryl;

R U is selected from the group consisting of C 3 -C 7 cycloalkyl C 1 -C 6 alkyl optionally substituted with up to 5 fluoro, and an optionally substituted heteroaryl;

each m is independently 0, 1, 2, or 3;

each p is independently 0, 1, 2, 3, 4, 5, or 6; and

each q is independently 1, 2, 3, 4, 5, or 6.

2. The compound of claim 1 , having the formula VIIIa:

and pharmaceutically acceptable salts thereof.

3. The compound of claim 2 , having the formula VIIIaa:

and pharmaceutically acceptable salts thereof.

4. The compound of claim 3 , having the formula VIIIab:

and pharmaceutically acceptable salts thereof.

5. The compound of claim 3 ,

wherein:

A 4 is selected from the group consisting of aryl and heteroaryl, where at least one atom forming the heteroaryl aromatic ring is a N (nitrogen), and said aryl and heteroaryl are each optionally substituted with one or more substituents selected from the group consisting of R 1 , R 2 , and R 3 , and;

G 4 is selected from the group consisting of phenyl, and heteroaryl, each optionally substituted with one or more substituents selected from the group consisting of R 4 , R 5 , and R 6 .

6. The compound of claim 3 ,

wherein:

A 4 is selected from the group consisting of aryl and heteroaryl, where at least one atom forming the heteroaryl aromatic ring is a N (nitrogen), and said aryl and heteroaryl are each optionally substituted with one or more substituents selected from the group consisting of R 1 , R 2 , and R 3 , and;

G 4 is selected from the group consisting of phenyl and heteroaryl, where at least one atom forming the heteroaryl aromatic ring is a N (nitrogen), and said aryl and heteroaryl are each optionally substituted with one or more substituents selected from the group consisting of R 4 , R 5 , and R 6 .

7. A compound of claim 1 that is an HGF mimetic, an HGF receptor agonist or an HGF receptor antagonist.

8. A compound of claim 1 that is a hematopoietic growth factor mimetic, a hematopoietic growth factor receptor agonist or a a hematopoietic growth factor receptor antagonist.

9. A compound of claim 1 that is an EPO mimic.

10. A compound of claim 1 that is a selective EPO receptor agonist.

11. A compound of claim 1 that is a selective EPO receptor partial agonist.

12. A compound of claim 1 that is a selective EPO receptor antagonist.

13. A compound of claim 1 that is a selective EPO receptor binding compound.

14. A method for modulating an EPO activity in a cell comprising contacting a cell with a compound of claim 1 .

15. A method for identifying a compound that modulates an EPO activity, comprising contacting a cell that expresses an EPO receptor with a compound of claim 1 ; and monitoring an effect of the compound on the cell.

16. A method of treating thrombocytopenia in a patient, comprising administering to the patient a therapeutically effective amount of a compound of claim 1 .

17. The method of claim 16 , wherein the thrombocytopenia results from radiation or chemotherapy.

18. The method of claim 17 , further comprising harvesting cells from the patient.

19. A method of treating a patient suffering from an anemia, a neutropenia, a cardiovascular disorder, an immune/autoimmune disorder, or a neurologic disorder, comprising administering to the patient a therapeutically effective amount of a compound of claim 1 .

20. A pharmaceutical composition comprising a physiologically acceptable carrier, diluent, or excipient; and a compound of claim 1 .

21. The compound of claim 1 , having the structure:

or a pharmaceutically acceptable salt thereof.

Assignments (2)
SECURITY INTEREST Recorded Oct 18, 2023
From: CYDEX PHARMACEUTICALS, INC.; LIGAND PHARMACEUTICALS INCORPORATED; METABASIS THERAPEUTICS, INC.; PFENEX INC.
To: CITIBANK, N.A., AS ADMINISTRATIVE AGENT
Reel/Frame 065271/0025 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 22, 2015
From: ZHI, LIN; HUDSON, ANDREW R.; VAN OEVEREN, CORNELIS A.; ROACH, STEVEN L.; PEDRAM, BIJAN; SHEN, YIXING; VALDEZ, LINO J.; BASINGER, JILLIAN; GRANT, VIRGINIA HEATHER SHARRON; PICKENS, JASON C.
To: LIGAND PHARMACEUTICALS INC.
Reel/Frame 035472/0893 →