IP Library Granted Patent US 8,802,645
Granted Patent B2
US 8,802,645 · App. 13/529,640 · Granted Aug 12, 2014

Molecule for treating an inflammatory disorder

Inventors: Garrit-Jan Boudewijn Van Ommen (Amsterdam, NL); Annemieke Aartsma-Rus (Hoofddorp, NL); Judith Christina Theodora Van Deutekom (Dordrecht, NL); Josephus Johannes De Kimpe (Utrecht, NL); Joseph Stephan Verbeek (Leiden, NL); Aliye Seda Ylmaz-Elis (Hoofddorp, NL)
Assignees: Prosensa Technologies B.V.; Academisch Ziekenhuis Leiden H.O.D.N. LUMC
C12N15/113C12N15/111C12N2310/11C12N2320/33C12N2320/30
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Quick Facts
Patent No.
US 8,802,645
App. No.
13/529,640
Granted
Aug 12, 2014
Kind
B2
Abstract

The invention provides two types of oligonucleotides for treating an inflammatory disorder: an oligonucleotide which is able of altering the splicing of a pre-mRNA encoding a C5 in order to decrease the amount of a C5a and an oligonucleotide which is able of altering the splicing of a pre-mRNA encoding a IL-1RAcP in order to increase the amount of a soluble IL-1RAcP. The invention further provides the use of said oligonucleotides for preventing or treating an inflammatory disorder.

Claims (23)

1. An oligonucleotide which alters the splicing of a pre-mRNA encoding IL-1RAcP, wherein said oligonucleotide binds a part of exon 9 in the pre-mRNA encoding IL-1RAcP, wherein exon 9 comprises SEQ ID NO: 5 or 6, said oligonucleotide comprising a modification selected from the group consisting of: a modification to increase resistance to RNAseH within a cell, a backbone modification and/or a sugar modification.

2. An oligonucleotide according to claim 1 , wherein said oligonucleotide induces the skipping of exon 9 in the pre-mRNA encoding IL-1 RAcP.

3. An oligonucleotide according to claim 2 , wherein said oligonucleotide inhibits the inclusion of exon 9 in of the pre-mRNA encoding IL-1 RAcP.

4. An oligonucleotide according to claim 1 , wherein said oligonucleotide comprises a sequence which binds to at least a part of exon 9 in the pre-mRNA encoding IL-1RAcP wherein said part of exon 9 is a contiguous stretch comprising at least 8 nucleotides and wherein said oligonucleotide also binds to at least a part of a non-exon region of the pre-mRNA encoding IL-1RAcP wherein said part of the non-exon region is a contiguous stretch comprising at least 8 nucleotides.

5. An oligonucleotide according to claim 1 , wherein said oligonucleotide comprises a sequence which also binds a splice site or an intronic sequence of the pre-mRNA encoding IL-1RAcP.

6. An oligonucleotide according to claim 4 , wherein the contiguous stretch of exon 9 and/or the contiguous stretch of non-exon region comprises 8-50 nucleotides of exon 9 in the pre-mRNA encoding IL-1RAcP.

7. An oligonucleotide according to claim 1 , wherein said oligonucleotide comprises or consists of a sequence selected from the group consisting of: SEQ ID NOS: 25-41.

8. An oligonucleotide according to claim 1 , wherein the oligonucleotide has a modified backbone and a modified sugar moiety wherein the oligonucleotide comprises one or more 2′-O-methyl riboses and one or more phosphorothioate internucleoside linkages.

9. An oligonucleotide according to claim 8 , wherein the oligonucleotide comprises a 2′-O-methyl phosphorothioate internucleoside linkage and a locked nucleic acid monomer.

10. An oligonucleotide according to claim 1 , wherein said oligonucleotide comprises at least one inosine and/or a base able to form a wobble base pair.

11. A method for preventing or treating an inflammatory disorder in an individual, the method comprising administering to said individual an effective amount of an oligonucleotide wherein said oligonucleotide alters the splicing of a pre-mRNA encoding IL-1RAcP, binds a part of exon 9 of the IL-1RAcP pre-mRNA, wherein exon 9 comprises SEQ ID NO: 5 or 6, said oligonucleotide comprising a modification selected from the group consisting of: a modification to increase resistance to RNAseH within a cell, a backbone modification, and/or a sugar modification.

12. The method of claim 11 , wherein said disorder comprises rheumatoid arthritis (RA), juvenile rheumatoid arthritis, psoriasis, psoriatic arthritis, ankylosing spondylitis, inflammatory bowel disease including Crohn's disease or ulcerative colitis, hepatitis, sepsis, alcoholic liver disease, or non-alcoholic steatosis.

13. A composition comprising the oligonucleotide of claim 1 .

14. A composition according to claim 13 , further comprising a second oligonucleotide, wherein said second oligonucleotide alters the splicing of a pre-mRNA encoding C5 in order to decrease the amount of a C5a.

15. An oligonucleotide according to claim 6 , wherein the contiguous stretch comprises 14-25 nucleotides of exon 9 in of the pre-mRNA encoding IL-1 RAcP.

16. A composition according to claim 13 , wherein the composition is a pharmaceutical composition, said pharmaceutical composition comprising a pharmaceutically acceptable carrier, adjuvant, diluent and/or excipient.

17. An oligonucleotide which alters the splicing of a pre-mRNA encoding IL-1RAcP, wherein said oligonucleotide binds a part of a non-exon region of the pre-mRNA encoding IL-1RAcP, wherein exon 9 in the pre-mRNA encoding IL-1RAcP comprises SEQ ID NO: 5 or 6; wherein said oligonucleotide induces the skipping of exon 9 in the pre-mRNA encoding IL-1RAcP, and wherein said oligonucleotide comprises a modification selected from the group consisting of: a modification to increase resistance to RNAseH within a cell, a backbone modification and/or a sugar modification.

18. The oligonucleotide of claim 1 , wherein the modification to increase resistance to RNAseH within a cell is selected from the group consisting of: a backbone modification, a sugar modification, and a base modification.

19. The oligonucleotide of claim 18 , wherein the backbone modification is selected from the group consisting of: a phosphorodithioate internucleoside linkage, a phosphorothioate internucleoside linkage, a chirally pure phosphorothioate internucleoside linkage, a methyl phosphonate internucleoside linkage, and a H-phosphonate internucleoside linkage.

20. The oligonucleotide of claim 18 , wherein the sugar modification is selected from the group consisting of: 2′-halide, 2′-O-alkyl, 2′-O-methyl, 2′-F, 2′-O-(2-methoxy)ethyl, 2′-O-ethyl, 2′-O-allyl, 2′-O-butyryl, 2′-O-propargyl, 2′-O-(2-amino)ethyl, a locked nucleic acid monomer, and an ethylene-bridged nucleic acid monomer.

21. The oligonucleotide of claim 18 , wherein the base modification is selected from the group consisting of: 5-halogenated uracil, 5-halogenated cytosine, 5-aminomethyl-uracil, 2,6-diaminopurine, 5-propargyl-cytosine, 5-propargyl-uracil, G-clamp and its derivatives, 5-methyl-cytosine and 5-methyl-uracil.

22. The oligonucleotide of claim 18 , wherein the modification to increase resistance to RNAseH comprises a 2′-O-methyl sugar modification and a phosphorothioate internucleoside linkage backbone modification.

23. The oligonucleotide of claim 18 , wherein the modification to increase resistance to RNAse H comprises a 2′-O-methyl sugar modification, a phosphorothioate internucleoside linkage backbone modification and/or a locked nucleic acid monomer sugar modification.

Assignments (4)
CHANGE OF NAME Recorded Sep 30, 2015
From: PROSENSA TECHNOLOGIES B.V.
To: BIOMARIN TECHNOLOGIES B.V.
Reel/Frame 036732/0042 →
CHANGE OF ADDRESS OF ASSIGNEE Recorded Feb 5, 2015
From: PROSENSA TECHNOLOGIES B.V.
To: PROSENSA TECHNOLOGIES B.V.
Reel/Frame 034916/0132 →
CORRECTIVE ASSIGNMENT TO CORRECT THE NAME OF THE FIRST ASSIGNOR PREVIOUSLY RECORDED ON REEL 028421 FRAME 0470. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT OF ASSIGNORS INTEREST. Recorded Jul 18, 2012
From: VAN OMMEN, GARRIT-JAN BOUDEWIJIN; AARTSMA-RUS, ANNEMIEKE; VAN DEUTEKOM, JUDITH CHRISTINA THEODORA; DE KIMPE, JOSEPHUS JOHANNES; VERBEEK, JOSEPH STEPHAN; YILMAZ-ELIS, ALIYA SEDA
To: PROSENSA TECHNOLOGIES B. V.; ACADEMISCH ZIEKENHUIS LEIDEN H.O.D.N. LUMC
Reel/Frame 028807/0591 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 21, 2012
From: BOUDEWIJN, GARRIT-JAN; AARTSMA-RUS, ANNEMIEKE; VAN DEUTEKOM, JUDITH CHRISTINA THEODORA; DE KIMPE, JOSEPHUS JOHANNES; VERBEEK, JOSEPH STEPHEN; YILMAZ-ELIS, ALIYE SEDA
To: PROSENSA TECHNOLOGIES B.V.; ACADEMISCH ZIEKENHUIS LEIDEN H.O.D.N. LUMC
Reel/Frame 028421/0470 →
Priority Claims (1)
EP 09180760 · Dec 24, 2009 · regional
Continuity (3)
Continuation PCTNL2010050882 · Dec 22, 2010
Provisional Application 61290102 · Dec 24, 2009
Related Publication 20120259002A1 · Oct 11, 2012