Method and system for determination of molecular interaction parameters
View Patent ↗A method of determining kinetic parameters for a reversible molecular interaction between a ligand immobilized to a solid support surface and a binding partner to the ligand in solution, comprises sequentially, without intermediate regeneration or renewal of the immobilized ligand, flowing a plurality of fluid volumes containing different known concentrations of the binding partner over the solid support surface, monitoring the momentary amount of binding partner bound to the solid support surface related to time and solution concentration of binding partner and collecting the binding data, and determining the kinetic parameters by globally fitting a predetermined kinetic model for the interaction between the binding partner and the immobilized ligand to the collected binding data, which model allows for mass transport limitation at the solid support surface. An analytical system for carrying out the method, a computer program, a computer program product and a computer system for performing the method are also disclosed.
1. An analytical system for monitoring interactions between molecules comprising:
an interaction detector for detecting a reversible molecular interaction between a ligand immobilized to a solid support surface and a binding partner to the ligand in a fluid flow; and
a microfluidic system arranged to provide a fluid flow to the interaction detector with known concentration of the binding partner comprising:
a sample solution inlet;
a buffer solution inlet;
a tubing segment connecting the sample solution inlet and the buffer solution inlet to the interaction detector;
a pump or a valve arranged to control supply of sample solution and buffer solution into each one of the sample solution inlet and the buffer solution inlet respectively; and
a controller for controlling the operation of said pumps or valves to provide a supply of sample solution and buffer solution into the tubing segment to dilute the sample solution to form a homogenous mixture of buffer and sample solution with a known concentration of the binding partner at the interaction detector,
wherein the controller is arranged to control the operation of said pumps or valves to sequentially, without intermediate regeneration or renewal of the immobilized ligand, flow from said tubing segment a plurality of fluid volumes containing different known concentrations of the sample solution over the interaction detector during a same analytical cycle to permit association of the binding partner in the sample solution to the ligand immobilized to the solid support surface of the interaction detector, and
wherein the controller is further arranged to:
a) monitor the momentary amount of binding partner bound to the solid support surface of the interaction detector as a function of time and sample solution concentration,
b) collect binding data, and
c) determine kinetic parameters by globally fitting a predetermined binding interaction model for the interaction between the binding partner and the immobilized ligand to the collected binding data.
2. The analytical system of claim 1 , wherein the controller is arranged to control the operation of said pumps or valves to provide a supply of sample solution and buffer solution create a stepwise gradient of known concentrations of the binding partner at the interaction detector.
3. The analytical system of claim 1 , wherein the solid support surface is a sensor surface.
4. The analytical system of claim 1 , wherein the detection at the solid support surface is based on evanescent wave sensing.
5. The analytical system of claim 1 , wherein the detection at the solid support surface is based on surface plasmon resonance (SPR).
6. The analytical system of claim 1 , wherein the detection at the solid support surface is based on detection of a label.
7. The analytical system of claim 1 , wherein the sample solution inlet and the buffer solution inlet each is connected to the tubing segment by a pump controlled by the controller.
8. The analytical system of claim 1 , wherein the sample solution inlet and the buffer solution inlet are connected to the tubing segment by a two-way valve controlled by the controller.
9. The analytical system of claim 2 , wherein the controller is arranged to control the operation of said pumps or valves to sequentially, flowing from said tubing segment a plurality of fluid volumes containing different known concentrations of the sample solution over the interaction detector to permit association of a binding partner in the sample solution to a ligand immobilized to a solid support surface of the interaction detector wherein the controller is further arranged to:
a) monitor the momentary amount of binding partner bound to the solid support surface of the interaction detector related to time and sample solution concentration of binding partner and collecting the binding data; and
b) determine the kinetic parameters by globally fitting a predetermined binding interaction model for the interaction between the binding partner and the immobilized ligand to the collected binding data.