Macrophage migration inhibitory factor (MIF) promoter polymorphism in inflammatory disease
View Patent ↗Describe herein is a novel CATT-tetranucleotide repeat polymorphism at position −817 of the human Mif that functionally affects the activity of the Macrophage Inhibitory Factor (MIF) promoter in gene reporter assays. Four genotypes are described which comprise 5, 6, 7, or 8-CATT repeat units. Of these, the 5-CATT allele has the lowest level of basal and stimulated MIF promoter activity in vitro. The presence of the low expressing, 5-CATT repeat allele correlated with low disease severity in a cohort of rheumatoid arthritis patients. Methods, compositions and apparatus for detecting this CATT-tetranucleotide repeat polymorphism at position −817 of the human Mif gene, and for using same for assessing predisposition to severe inflammatory disease, are also disclosed.
1. An in vitro method for diagnosing severity of or screening for severity of rheumatoid arthritis in a patient with rheumatoid arthritis, comprising:
a) amplifying CATT repeat units that begin at nucleotide position 259 of the human MIF gene (SEQ ID NO: 12) with a PCR primer amplification set,
b) analyzing the size of the amplified product to determine how many CATT repeats are present, and
c) detecting the presence or absence of homozygous 5,5 CATT repeat units that begin at nucleotide position 259 of SEQ ID NO: 12,
wherein the primer amplification set comprises a set of primers selected from the group consisting of SEQ ID NO: 1 and SEQ ID NO: 2, SEQ ID NO: 1 and SEQ ID NO: 9, and SEQ ID NO: 10 and SEQ ID NO: 11, and
wherein the presence of a homozygous 5,5 CATT genotype indicates diagnosis of, or is associated with, a lower risk of severe arthritis, and
wherein the absence of a homozygous 5,5, CATT genotype indicates diagnosis of, or is associated with, a higher risk of severe arthritis.
2. A method of amplifying the CATT repeat units that begin at position 259 of SEQ ID NO: 12 in a DNA containing sample from a patient with rheumatoid arthritis, comprising:
a) amplifying the CATT repeat units with a PCR primer amplification set, and
b) analyzing the size of the amplified product to determine the presence or absence of five CATT repeats,
wherein the primer amplification set comprises a set of primers selected from the group consisting of SEQ ID NO: 1 and SEQ ID NO: 2, SEQ ID NO: 1 and SEQ ID NO: 9, and SEQ ID NO: 10 and SEQ ID NO: 11.