IP Library Granted Patent US 9,371,352
Granted Patent B2
US 9,371,352 · App. 13/803,972 · Granted Jun 21, 2016

Modified glycolipids and methods of making and using the same

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Quick Facts
Patent No.
US 9,371,352
App. No.
13/803,972
Granted
Jun 21, 2016
Kind
B2
Abstract

The invention is directed to compositions and methods related to proteins that are physically associated with ceramide-like glycolipids for use as activators of NKT cells. The compositions and methods of the present invention are useful for the prevention and treatment of diseases.

Claims (75)

1. A modified ceramide-like glycolipid comprising a photoreactive group, wherein said photoreactive group has been covalently bound to the terminus of an acyl chain of the N-acyl lipophilic moiety of a ceramide-like glycolipid, wherein said photoreactive group is a benzophenone group, wherein said ceramide-like glycolipid is an α-galactosylceramide, and wherein said modified ceramide-like glycolipid is capable of binding to CD1d and enhancing the activity of natural killer T (NKT) cells.

2. The modified ceramide-like glycolipid of claim 1 , wherein said acyl chain is a linear acyl chain comprising at least 11 atoms, wherein the numbering of said atoms excludes hydrogens.

3. The modified ceramide-like glycolipid of claim 2 , wherein said acyl chain is selected from the group consisting of:

wherein Y is —O—, —CH 2 —, —S—, —OCH 2 —, —SCH 2 —, —CH 2 CH 2 —, or a bond; and PRG is the photoreactive group.

4. The modified ceramide-like glycolipid of claim 1 , wherein said α-galactosylceramide has the structure set forth in Formula II:

wherein

R1 is a linear or branched C 1 -C 27 alkane or C 2 -C 27 alkene; or R1 is —C(OH)—R3 wherein R3 is linear or branched C 1 -C 26 alkane or C 2 -C 26 alkene; and

R2 is one of the following (a)-(e):

(a) —CH 2 (CH 2 ) x CH 3 ,

(b) —CH(OH)(CH 2 ) x CH 3 ,

(c) —CH(OH)(CH 2 ) x CH(CH 3 ) 2 ,

(d) —CH═CH(CH 2 ) x CH 3 ,

(e) —CH(OH)(CH 2 ) x CH(CH 3 )CH 2 CH 3 ,

wherein X is an integer ranging from 4-17.

5. The modified ceramide-like glycolipid of claim 4 , wherein R2 is —CH(OH)—(CH 2 ) 13 CH 3 .

6. The modified ceramide-like glycolipid of claim 4 , wherein R1 is selected from the group consisting of (CH 2 ) 9 CH═CH—CH 2 —CH═CH(CH 2 ) 4 CH 3 , (CH 2 ) 8 CH═CH—CH 2 —CH═CH(CH 2 ) 4 CH 3 , (CH 2 ) 7 CH═CH—CH 2 —CH═CH(CH 2 ) 4 CH 3 , (CH 2 ) 3 CH═CH—CH 2 —CH═CH—CH 2 —CH═CH—CH 2 —CH═CH—(CH 2 ) 4 CH 3 , (CH 2 ) 3 CH═CH—CH 2 —CH═CH—CH 2 —CH═CH—CH 2 —CH═CH—CH 2 —CH═CH—CH 2 CH 3 , (CH 2 ) 7 CH═CH—CH 2 —CH═CH═(CH 2 ) 4 CH 3 , (CH 2 ) 7 CH═CH—CH═CH(CH 2 ) 5 CH 3 , (CH 2 ) 8 CH═CH—CH═CH(CH 2 ) 4 CH 3 , (CH 2 ) 9 CH═CH—CH═CH(CH 2 ) 5 CH 3 , (CH 2 ) 6 CH═CH—CH═CH—CH═CH(CH 2 ) 4 CH 3 , (CH 2 ) 6 CH═CH—CH═CH—CH═CH(CH 2 ) 4 CH 3 and (CH 2 ) 7 CH═CH—CH═CH—CH═CH(CH 2 ) 3 CH 3 .

7. The modified ceramide-like glycolipid of claim 1 , wherein said α-galactosylceramide has the structure set forth in Formula III:

wherein R is —C(O)R1, wherein R1 is a linear or branched C 1 -C 27 alkane or C 2 -C 27 alkene; or R1 is —C(OH)—R3 wherein R3 is a linear or branched C 1 -C 26 alkane or C 2 -C 26 alkene; or R1 is a C 6 -C 27 alkane or alkene wherein (i) the C 6 -C 27 alkane or alkene is substituted with a C 5 -C 15 cycloalkane, C 5 -C 15 cycloalkene, heterocycle, or aromatic ring or (ii) the C 6 -C 27 alkane or alkene includes, within the C 6 -C 27 alkyl or alkenyl chain, a C 5 -C 15 cycloalkane, C 5 -C 15 cycloalkene, heterocycle, or aromatic ring; or R1 is an optionally substituted aromatic ring, or an aralkyl, and

R2 is one of the following (a)-(e):

(a) —CH 2 (CH 2 ) x CH 3 ,

(b) —CH(OH)(CH 2 ) x CH 3 ,

(c) —CH(OH)(CH 2 ) x CH(CH 3 ) 2 ,

(d) —CH═CH(CH 2 ) x CH 3 ,

(e) —CH(OH)(CH 2 ) x CH(CH 3 )CH 2 CH 3 ,

wherein X is an integer ranging from 4-17.

8. The modified ceramide-like glycolipid of claim 7 , wherein R1 is substituted with oxo; hydroxy; halogen; phenyl; —OC(O)R6; —OR6; —C(O)R6; or N(R6) 2 , wherein each R6 is independently a C 1 -C 6 substituted alkyl, or a substituted aromatic ring optionally substituted with halogen; hydroxy; —OC(O)R7; —OR7; —C(O)R7 or N(R7) 2 , and

wherein each R7 is a substituted C 1 -C 6 alkyl.

9. The modified ceramide-like glycolipid of claim 7 , wherein R1 is selected from the group consisting of

where ( ) represent the point of attachment of R1 to the compound of Formula III.

10. The modified ceramide-like glycolipid of claim 1 , wherein said α-galactosylceramide is selected from the group consisting of: (2S,3S,4R)-1-O-(α-D-galactopyranosyl)-N-hexacosanoyl-2-amino-1,3,4-octadecanetriol (KRN7000), (2S,3S)-1-O-(α-D-galactopyranosyl)-N-hexacosanoyl-2-amino-1,3-octadecanediol), and (2S,3S,4R)-1-CH 2 -(α-galactopyranosyl)-N-hexacosanoyl-2-amino-1,3,4-octadecanetriol (α-C-GalCer).

11. The modified ceramide-like glycolipid of claim 1 , wherein said modified glycolipid has a structure selected from the group consisting of:

12. A method for synthesizing a modified glycolipid of Formula (VI) comprising a benzophenone group, said method comprising the steps of:

activating a carboxylic acid derivative of Formula (IV) to form an activated acyl derivative

and

coupling the activated acyl derivative with a glycolipid of Formula (V)

thereby forming the modified glycolipid comprising a benzophenone group of Formula (VI)

wherein

G is a linear or branched C 1 -C 27 alkane or C 2 -C 27 alkene; or G is —C(OH)—R3 wherein R3 is a linear or branched C 1 -C 26 alkane or C 2 -C 26 alkene; or R1 is a C 6 -C 27 alkane or alkene wherein (i) the C 6 -C 27 alkane or alkene is substituted with a C 5 -C 15 cycloalkane, C 5 -C 15 cycloalkene, heterocycle, or aromatic ring or (ii) the C 6 -C 27 alkane or alkene includes, within the C 6 -C 27 alkyl or alkenyl chain, a C 5 -C 15 cycloalkane, C 5 -C 15 cycloalkene, heterocycle, or aromatic ring; or R1 is an optionally substituted aromatic ring, or an aralkyl;

R 4 is an α-linked galactoside;

A is —O—, —CH 2 —, or is a single bond,

Y is —O—, —CH 2 — or —S—, and

R 2 is a substituted or an unsubstituted C 3 -C 40 alkyl, alkenyl or alkynyl chain; and

wherein said said modified glycolipid is capable of binding to CD1d and enhancing the activity of natural killer T (NKT) cells.

13. The method according to claim 12 , wherein R2 of the modified glycolipid comprising a benzophenone group of Formula (VI) is selected from the group consisting of:

(a) —CH 2 (CH 2 ) x CH 3 ,

(b) —CH(OH)(CH 2 ) x CH 3 ,

(c) —CH(OH)(CH 2 ) x CH(CH 3 ) 2 ,

(d) —CH═CH(CH 2 ) x CH 3 , and

(e) —CH(OH)(CH 2 ) x CH(CH 3 )CH 2 CH 3 , wherein x is an integer ranging from 0-40.

14. The method according to claim 12 , wherein:

G is —(CH 2 )n-, wherein n is an integer ranging from 0-20 and Y is O;

R2 is —CH(OH)(CH 2 ) x CH 3 , wherein x is an integer ranging from 4-17;

A is O; and

Y is O.

15. A modified glycolipid/protein complex comprising: a CD1d protein and the modified ceramide-like glycolipid of claim 1 , wherein said modified glycolipid is physically associated with said CD1d protein.

16. The modified glycolipid/protein complex of claim 15 , wherein said modified glycolipid/protein complex further comprises a β2-microglobulin physically associated with said CD1d.

17. The modified glycolipid/protein complex of claim 16 , wherein said modified glycolipid/protein complex enhances the activity of Natural Killer T (NKT) cells.

18. A modified glycolipid/protein complex comprising:

a) a CD1d protein;

b) a β2-microglobulin physically associated with said CD1d protein; and

c) a modified ceramide-like glycolipid;

wherein said modified ceramide-like glycolipid is covalently linked to said CD1d protein via photoactivation of a modified ceramide-like glycolipid of claim 1 , and wherein said modified glycolipid/protein complex enhances the activity of natural killer T (NKT) cells.

19. The modified glycolipid/protein complex of claim 18 , wherein said modified glycolipid/protein complex further comprises an antibody or fragment thereof specific for a target antigen, and wherein said antibody or antigen-binding fragment thereof is linked to said CD1d.

20. The modified glycolipid/protein complex of claim 19 , wherein said target antigen is a cell surface marker of tumor cells.

21. The modified glycolipid/protein complex of claim 20 , wherein said cell surface marker is selected from the group consisting of CEA, Her2/neu, EGFR type I or type II, CD19, CD20, CD22, Muc-1, PSMA, or STEAP.

22. The modified glycolipid/protein complex of claim 18 , further comprising an antigen.

23. The modified glycolipid/protein complex of claim 22 , wherein said antigen is an immunogenic polypeptide of a virus or a cell selected from the group consisting of a virus, bacterium, fungus, and tumor cell.

24. A composition comprising the modified glycolipid/protein complex of claim 18 , and a pharmaceutical carrier.

25. A method for producing a modified glycolipid/protein complex, said method comprising the steps of:

a) contacting the modified ceramide-like glycolipid of claim 1 with a CD1d protein; and

b) irradiating said modified glycolipid and said CD1d protein with ultraviolet light to produce a modified glycolipid/protein complex.

26. A method of inducing or enhancing an immune response against a tumor in a subject, comprising administering to said subject the modified glycolipid/protein complex of claim 20 .

27. The method of claim 26 , wherein said modified glycolipid/protein complex is administered in an amount sufficient to enhance the activity of Natural Killer T (NKT) cells in said subject.

28. The method of claim 26 , wherein said cell surface marker is selected from the group consisting of CEA, Her2/neu, EGFR type I or type II, CD19, CD20, CD22, Muc-1, PSMA, or STEAP.

29. A method for enhancing an immune response in a subject to a heterologous antigen, wherein said method comprises administering to said subject said heterologous antigen and the modified glycolipid/protein complex of claim 18 simultaneously, prior to, or subsequent to the administration of said heterologous antigen, and wherein said heterologous antigen comprises an immunogenic polypeptide.

Assignments (8)
MERGER AND CHANGE OF NAME Recorded Feb 26, 2019
From: ALBERT EINSTEIN COLLEGE OF MEDICINE, INC.; ALBERT EINSTEIN COLLEGE OF MEDICINE
To: ALBERT EINSTEIN COLLEGE OF MEDICINE
Reel/Frame 048438/0275 →
CORRECTIVE ASSIGNMENT TO CORRECT PATENT NO. 8726046 TO 8729046 PREVIOUSLY RECORDED AT REEL: 036876 FRAME: 0018. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Recorded Oct 28, 2015
From: ALBERT EINSTEIN COLLEGE OF MEDICINE OF YESHIVA UNIVERSITY
To: COM AFFILIATION, INC.
Reel/Frame 036984/0184 →
CHANGE OF NAME Recorded Oct 20, 2015
From: COM AFFILIATION, INC.
To: ALBERT EINSTEIN COLLEGE OF MEDICINE, INC.
Reel/Frame 036907/0795 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 16, 2015
From: ALBERT EINSTEIN COLLEGE OF MEDICINE OF YESHIVA UNIVERSITY
To: COM AFFILIATION, INC.
Reel/Frame 036876/0018 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 5, 2014
From: ZAUDERER, MAURICE
To: VACCINEX, INC.
Reel/Frame 033463/0301 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 6, 2014
From: ZAUDERER, MAURICE
To: VACCINEX, INC.
Reel/Frame 032156/0440 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 6, 2014
From: PORCELLI, STEVEN A.
To: ALBERT EINSTEIN COLLEGE OF MEDICINE OF YESHIVA UNIVERSITY
Reel/Frame 032156/0805 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Apr 26, 2013
From: PORCELLI, STEVEN A.
To: ALBERT EINSTEIN COLLEGE OF MEDICINE OF YESHIVA UNIVERSITY
Reel/Frame 030296/0650 →