IP Library Patent Application 13810410
Patent Application
App. No. 13/810,410

THERAPEUTICALLY ACTIVE COMPOSITIONS AND THEIR METHODS OF USE

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Patent No.
US None
App. No.
13/810,410
Abstract

Provided are methods of treating a cancer characterized by the presence of a mutant allele of IDH1 comprising administering to a subject in need thereof a compound described here.

Claims (62)

1 . A compound of Formula II:

or a pharmaceutically acceptable salt thereof, wherein:

R 1 is a C 4 -C 7 monocyclic or bicyclic cycloalkyl optionally substituted on a single carbon atom with 1 to 2 fluoro;

R 3 is selected from 3-fluorophenyl, 3-methylphenyl, 3-chlorophenyl, and thien-2-ylmethyl;

R 4 is selected from saturated heterocyclyl, —CH 2 -heterocyclyl, —CH 2 -heteroaryl, benzyl, —CH(R 11 )—N(R 11 )-heteroaryl, —CH(R 11 )—N(R 11 )-phenyl, —CH(R 11 )—N(R 11 )-heterocyclyl, —CH(R 11 )—N(R 11 )—C(O)CH 3 , and —CH 2 —O-heteroaryl, wherein each R 11 is independently selected from hydrogen and methyl; and each saturated heterocyclyl, heterocyclyl, phenyl, benzyl and heteroaryl is optionally substituted; and

R 10 is selected from methyl, hydrogen, fluoro, chloro, and bromo, wherein:

when R 1 is cyclopentyl or cyclohexyl, and R 3 is thien-2-ylmethyl, then R 4 is other than thien-2-ylmethyl, 1H-benizimidazol-1-ylmethyl, 1H-indol-3-ylmethyl, or 1H-benzotriazol-1-ylmethyl;

when R 1 is cyclopentyl, R 10 is hydrogen, and R 3 is 3-fluorophenyl, 3-methylphenyl, or 3-chlorophenyl, then R 4 is other than thien-2-ylmethyl;

when R 1 is cyclopentyl, R 10 is methyl and R 3 is 3-fluorophenyl, then R 4 is other than thien-2-ylmethyl or 1H-benzotriazol-1-ylmethyl;

when R 1 is cyclopentyl, R 10 is fluoro and R 3 is 3-methylphenyl, then R 4 is other than thien-2-ylmethyl or 1H-benzotriazol-1-ylmethyl;

when R 1 is cyclopentyl, R 10 is fluoro and R 3 is 3-fluorophenyl, then R 4 is other than thien-2-ylmethyl;

when R 1 is cyclohexyl, R 10 is hydrogen, and R 3 is 3-methylphenyl, or 3-chlorophenyl, then R 4 is other than thien-2-ylmethyl; and

when R 1 is cyclohexyl, R 10 is hydrogen, and R 3 is 3-fluorophenyl, then R 4 is other than 1H-benzotriazol-1-ylmethyl.

2 . The compound of claim 1 , wherein R 3 is 3-fluorophenyl.

3 . The compound of claim 1 or 2 , wherein:

R 1 is selected from cyclohexyl, cyclopentyl, cycloheptyl, 3,3-difluorocyclobutyl, 4,4,-difluorocyclohexyl, and bicyclo[2.2.1]heptanyl; and

R 4 is selected from 1-(methylmethoxycarbonylamino)ethyl, 1,2,3,4-tetrahydroquinolin-1-yl, 1-ethoxycarbonylpiperidin-2-yl, 1-ethoxycarbonylpyrrolidin-2-yl, 1H-benzimidazol-1-ylmethyl, 1H-indazol-3-ylmethyl, indolin-1-ylmethyl, 1H-indol-3-ylmethyl, 1H-indol-5-ylmethyl, 1H-pyrrolo[2,3-b]pyridine-3-ylmethyl, 1H-pyrrolo[3,2-b]pyridin-3-ylmethyl, 1-methoxycarbonylpiperidin-2-yl, 1-methoxycarbonylpyrrolidin-2-yl, 2-fluoropyridin-3-ylaminomethyl, 2-imino-4-fluoropyridin-1-ylmethyl, 2-methoxyphenylaminomethyl, 2-methyl-1H-benzimidazol-1-ylmethyl, 2-methylimidazol-1-ylmethyl, 2-trifluoromethyl-1H-imidazol-1-yl, 3-cyanophenylaminomethyl, 3-fluoropyridin-2-ylaminomethyl, 3-methoxyphenylaminomethyl, 4-(1,3,4-oxadiazole-2-yl)phenylaminomethyl, 4-(dimethylaminocarbonyloxy)phenylmethyl, 4,5-dichloroimidazol-1-ylmethyl, 4-cyanophenylaminomethyl, 4-fluorophenylaminomethyl, 4-fluoropyridin-2-ylaminomethyl, 4-hydroxyphenylmethyl, 4-methoxycarbonylmorpholin-3-yl, 4-methoxycarbonylpiperazin-1-ylmethyl, 4-methoxyphenylaminomethyl, 4-methylcarbonyloxyphenylmethyl, 5-fluoropyridin-2-aminomethyl, 5-fluoropyridin-2-oxymethyl, 6-fluoropyridin-3-ylaminomethyl, benzomorpholin-4-ylmethyl, methoxycarbonylaminomethyl, methylmethoxycarbonylaminomethyl, methylphenylaminomethyl, phenylaminomethyl, pyridin-2-oxymethyl, pyridin-2-ylaminomethyl, pyridin-2-yloxymethyl, pyridin-3-oxymethyl, pyridin-3-ylmethyl, pyridin-4-ylmethyl, thiazol-4-ylmethyl, and thien-2-ylmethyl.

4 . The compound of claim 1 , wherein the compound is selected from any one of Compound numbers 104, 126, 135, 140, 150, 155, 160, 161, 165, 173, 185, 186, 197, 198, 201, 202, 203, 210, 212, 213, 217, 218, 227, 228, 237, 240, 247, 253, 260, 265, 271, 272, 275, 276, 287, 288, 289, 290, 291, 293, 297, 301, 306, 307, 311, 313, 314, 316, 320, 321, 322, 331, 334, 341, 344, 348, 351, 356, 359, 361, 366, 378, 381, and 385 from Table 2.

5 . A method of treating a cancer characterized as having an R132X IDH1 mutation, the method comprising administering to a subject a therapeutically effective amount of a compound of formula A:

or a pharmaceutically acceptable salt thereof, wherein:

V and W are independently ═O or CF 3 ;

R 1 is selected from C 2 -C 6 alkyl, —(C 1 -C 3 alkylene)-O—(C 1 -C 3 alkyl), carbocyclyl, —(C 1 -C 2 alkylene)-(carbocyclyl), aryl, —(C 1 -C 2 alkylene)-(aryl), —(C 1 -C 2 alkylene)-(heteroaryl), and —(C 1 -C 2 alkylene)-(heterocyclyl);

R 2 is selected from C 4 -C 8 alkyl, carbocyclyl, aryl, heterocyclyl, heteroaryl, —(C 1 -C 4 alkylene)-(aryl), and —(C 1 -C 4 alkylene)-(heteroaryl);

R 3 is selected from C 2 -C 6 alkyl optionally substituted with ═O or —OH; C 2 -C 6 alkenyl;

—(C 1 -C 3 alkylene)-O—(C 1 -C 3 alkyl); carbocyclyl; aryl; heterocyclyl; heteroaryl; —(C 1 -C 2 alkylene)-(carbocyclyl); —(C 1 -C 2 alkylene)-(aryl); —(C 1 -C 2 alkylene)-(heterocyclyl); and —(C 1 -C 2 alkylene)-(heteroaryl);

R 4 is selected from —CF 3 , —CH 2 —O—CH 3 , —CH 2 Cl, —C(R 11 )—N(R 11 )—C(O)—O—(C 1 -C 4 alkyl) and —R 5 -R 6 -R 7 , wherein:

R 5 is selected from a bond; C 1 -C 3 straight or branched alkyl wherein one methylene unit in the alkyl of R 5 is optionally replaced with —O—, —S—, —S(O)—, or —S(O) 2 —; and C 2 -C 3 alkenyl or alkynyl;

R 6 is selected from a bond, —N(R 11 )—C(O)—, —C(O)—N(R 11 )—, —N(R 11 )—S(O) 1-2 —, —S(O) 1-2 —N(R 11 )—, —NH—, —N(C 1 -C 3 alkyl)-, and tetrazolyl;

R 7 is a carbocyclyl, aryl, heterocyclyl, or heteroaryl;

R 8 is selected from hydrogen and C 1 -C 4 alkyl; or R 8 and R 1 are taken together with the nitrogen atom to form a 5-12 membered heterocyclyl;

R 9 is selected from hydrogen and C 1 -C 4 alkyl; or R 9 and R 2 are taken together to form a 6-12 membered carbocyclyl or a 5-12 membered heterocyclyl; and

each R 11 is independently hydrogen or methyl,

wherein any carbocyclyl, aryl, heterocyclyl or heteroaryl is optionally substituted with one or more substituents.

6 . The method of claim 5 , wherein the compound is a compound of formula I,

or a pharmaceutically acceptable salt thereof, wherein:

V and W are independently ═O or CF 3 ;

R 1 is selected from C 2 -C 6 alkyl, —(C 1 -C 3 alkylene)-O—(C 1 -C 3 alkyl), carbocyclyl, —(C 1 -C 2 alkylene)-(carbocyclyl), aryl, —(C 1 -C 2 alkylene)-(aryl), —(C 1 -C 2 alkylene)-(heteroaryl), and —(C 1 -C 2 alkylene)-(heterocyclyl);

R 2 is selected from C 4 -C 8 alkyl, carbocyclyl, aryl, heterocyclyl, heteroaryl, —(C 1 -C 4 alkylene)-(aryl), and —(C 1 -C 4 alkylene)-(heteroaryl);

R 3 is selected from C 2 -C 6 alkyl optionally substituted with ═O or —OH; C 2 -C 6 alkenyl;

—(C 1 -C 3 alkylene)-O—(C 1 -C 3 alkyl); carbocyclyl; aryl, heterocyclyl, heteroaryl, —(C 1 -C 2 alkylene)-(carbocyclyl), —(C 1 -C 2 alkylene)-(aryl), —(C 1 -C 2 alkylene)-(heterocyclyl), and —(C 1 -C 2 alkylene)-(heteroaryl);

R 4 is selected from —CF 3 , —CH 2 —O—CH 3 and —R 5 -R 6 -R 7 , wherein:

R 5 is selected from a bond; C 1 -C 3 straight or branched alkyl wherein one methylene unit in the alkyl of R 5 is optionally replaced with —O—, —S—, —S(O)— or —S(O) 2 —; and C 2 -C 3 alkenyl or alkynyl;

R 6 is selected from a bond, —NH—C(O)—, —C(O)—NH—, —NH—S(O) 1-2 —, —S(O) 1-2 —NH—, and tetrazolyl;

R 7 is a carbocyclyl, aryl, heterocyclyl, or heteroaryl;

R 8 is selected from hydrogen and C 1 -C 4 alkyl; or R 8 and R 1 are taken together with the nitrogen atom to form a 5-12 membered heterocyclyl; and

R 9 is selected from hydrogen and C 1 -C 4 alkyl; or R 9 and R 2 are taken together to form a 6-12 membered carbocyclyl or a 5-12 membered heterocyclyl; or

wherein any carbocyclyl, aryl, heterocyclyl or heteroaryl is optionally substituted with one or more substituents.

7 . The method of claim 5 , wherein the compound is a compound of Formula I-c.

or a pharmaceutically acceptable salt thereof wherein:

R 1 is selected from a C 4 -C 7 monocyclic or bicyclic cycloalkyl optionally substituted on a single carbon atom with 1 to 2 fluoro; tetrahydropyranyl, pyrrolidinyl, phenyl, and t-butyl, wherein the phenyl and pyrrolidinyl are optionally substituted;

R 2 is selected from phenyl, biphenyl, thien-2-yl, and furanyl, wherein R 2 is optionally substituted; and

R 3 is selected from phenyl, biphenyl, pyridinyl, thiazolylmethyl, thienylmethyl, cyclohexyl and pyrazolyl, wherein any phenyl, biphenyl, pyridinyl, thiazolyl, thienyl, cyclohexyl or pyrazolyl portion of R 3 is optionally substituted.

8 . The method of claim 7 , wherein R 1 is selected from cyclohexyl, cyclopentyl, cycloheptyl, cyclobutyl, 3,3-difluorocyclobutyl, 4,4,-difluorocyclohexyl, bicyclo[2.2.1]heptanyl, tertahydropyran-3-yl, tertahydropyran-4-yl, 1-t-butoxycarbonylpyrrolidin-3-yl, t-butyl, 2-bromophenyl, 2-methylphenyl, and bicyclo[3.1.0]hexan-3-yl.

9 . The method of claim 7 or 8 , wherein R 2 is selected from phenyl, 2-methylphenyl, 2-fluorphenyl, 2-chlorophenyl, 2-bromophenyl, 2-bromo-5-fluorophenyl, 2,5-dichlorophenyl, 2-fluoro-5-methylphenyl, thien-2-yl, 4-fluorophenyl, 5-bromofuran-2-yl, 3-methylthien-2-yl, 2,4,5-trifluorophenyl, 3-fluoro-5-chlorophenyl, 2,5-difluoro-6-chlorophenyl, 3-chlorophenyl, 3-fluorophenyl, 3-methylphenyl, 2,6-dimethylphenyl, 3-bromopohenyl, 2-ethylphenyl, 2-nitrophenyl, 3′-methoxybiphenyl-3-yl, 2,5-dibromo-6-fluorophenyl, 2-trifluoromethylphenyl, 4-hydroxyphenyl, 3-hydroxyphenyl, 2-hydroxyphenyl, 2-methoxyphenyl, and 2-fluoro-5-methoxyphenyl.

10 . The method of any of claims 7 - 9 , wherein R 3 is selected from 3-fluorophenyl, 3-methylphenyl, 3-chlorophenyl, thien-2-ylmethyl, 3-(1-methyl-1H-pyrazol-4-yl)phenyl, 1-methyl-1H-pyrazol-3-yl, 4-chlorophenyl, 3-acetylaminophenyl, 3′-trifluoromethoxy-biphenyl-3-yl, pyridin-3-yl, 4-fluorophenyl, thiazol-2-ylmethyl, cyclohexyl, 2-methylphenyl, 3-fluoro-4-methylphenyl, 2-fluorophenyl, 2-chlorophenyl, 2-bromophenyl, phenyl, 3-bromophenyl, 2-fluorophenyl, 3-chloro-4-methylphenyl, 3-(pyriminidin-5-yl)phenyl, biphenyl-3-yl, 3-trifluoromethylphenyl, 3,4-methylenedioxyphenyl, 3,4-ethylenedioxyphenyl, 3-aminophenyl, 3-ethylcarbonylaminophenyl, 3-t-butoxycarbonylaminophenyl, 3-chloro-4-bromophenyl, 4-methlyphenyl, 3-methoxyphenyl, 3-(1-methyl-1H-pyrazol-5-yl)phenyl, 3-methoxycarbonylaminophenyl, 3-cetylphenyl, 3-(morpholin-4-yl)phenyl, 3,4-difluorophenyl, and 3-(4-t-butoxycarbonylpiperazin-1-yl)phenyl.

11 . The method of claim 5 , wherein the compound is a compound of any one of claims 1 - 4 .

12 . The method of any one of claims 5 to 11 , wherein the compound or a pharmaceutically acceptable salt thereof is formulated into a pharmaceutical composition together with a pharmaceutically acceptable carrier.

13 . The method of any one of claims 5 to 12 , wherein the subject is evaluated for the presence of an IDH1 R132X mutant allele prior to administration of the compound.

14 . The method of any one of claims 5 to 12 , wherein the subject is evaluated for the presence of an elevated level of 2HG prior to administration of the compound.

15 . The method of any one of claims 5 to 12 , wherein efficacy of treatment of cancer comprises monitoring the level of 2HG in a subject during treatment.

16 . The method of any one of claims 5 to 12 , wherein efficacy of treatment of cancer comprises monitoring the level of 2HG in a subject following termination of treatment.

17 . A pharmaceutical composition comprising a compound of any one of claims 1 to 4 ; and a pharmaceutically acceptable carrier.

Assignments (6)
CORRECTIVE ASSIGNMENT TO CORRECT THE ASSIGNEE NAME SERVIER PHARMACEUTICALS LLC BY REMOVAL OF COMMA AND UPDATING ZIP CODE TO 02210 PREVIOUSLY RECORDED ON REEL 056224 FRAME 0921. ASSIGNOR(S) HEREBY CONFIRMS THE CORRECTIVE ASSIGNMENT. Recorded Oct 28, 2021
From: AGIOS PHARMACEUTICALS, INC.
To: SERVIER PHARMACEUTICALS LLC
Reel/Frame 057970/0314 →
CORRECTIVE ASSIGNMENT TO CORRECT THE APPLICATION NO. 10,172,864 TO THE CORRECT APP NO. 61/160,253 PREVIOUSLY RECORDED ON REEL 056179 FRAME 0417. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Recorded May 12, 2021
From: AGIOS PHARMACEUTICALS, INC.
To: SERVIER PHARMACEUTICALS, LLC
Reel/Frame 056224/0921 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 7, 2021
From: AGIOS PHARMACEUTICALS, INC.
To: SERVIER PHARMACEUTICALS, LLC
Reel/Frame 056179/0417 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 28, 2013
From: YAN, SHUNQI
To: SCHRODINGER, LLC
Reel/Frame 030105/0928 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 28, 2013
From: SCHRODINGER, LLC.
To: AGIOS PHARMACEUTICALS, INC
Reel/Frame 030105/0940 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Mar 28, 2013
From: POPOVICI-MULLER, JANETA; SALITURO, FRANCESCO GERALD; SAUNDERS, JEFFREY O.; TRAVINS, JEREMY
To: AGIOS PHARMACEUTICALS, INC
Reel/Frame 030105/0960 →