Microorganisms and processes for the production of isoprene
The present invention provides a novel biosynthetic pathway for the production of isoprene from 3-methyl-2-buten-1-ol or 2-methyl-3-buten-2-ol. Further embodiments provide non-naturally occurring microorganism that have been modified to produce isoprene from 3-methyl-2-buten-1-ol or 2-methyl-3-buten-2-ol and methods of producing isoprene using said microorganism.
1. A non-naturally occurring microbial organism comprising an isoprene biosynthetic pathway for the conversion of dimethylallyl diphosphate (DMAPP) to isoprene, wherein the isoprene biosynthetic pathway comprises the conversion of DMAPP to 2-methyl-3-buten-2-ol followed by the conversion of 2-methyl-3-buten-2-ol to isoprene and wherein the isoprene biosynthetic pathway comprises an exogenous nucleic acid encoding at least one 2-methyl-3-buten-2-ol synthase capable of converting DMAPP to 2-methyl-3-buten-2-ol and an exogenous nucleic acid encoding at least one 2-methyl-3-buten-2-ol dehydratase capable of converting 2-methyl-3-buten-2-ol to isoprene and wherein the isoprene biosynthetic pathway is expressed at a sufficient level to produce isoprene.
2. The non-naturally occurring microbial organism of claim 1 , wherein the organism overexpresses one or more endogenous or exogenous genes encoding at least one enzyme selected from: an enzyme of the methylerythritol phosphate pathway or an enzyme of the mevalonate pathway.
3. The non-naturally occurring microbial organism of claim 2 , wherein the dimethylallyl diphosphate available for conversion to isoprene is increased.
4. The non-naturally occurring microbial organism of claim 1 , wherein the 2-methyl-3-buten-2-ol dehydratase is a linalool dehydratase-isomerase.
5. The non-naturally occurring microbial organism of claim 4 , wherein the 2-methyl-3-buten-2-ol dehydratase is a linalool dehydratase-isomerase derived from Castellaniella defragrans.
6. The non-naturally occurring microbial organism of claim 1 , further comprising one or more endogenous or exogenous genes encoding at least one enzyme of the methylerythritol phosphate pathway selected from: 1-deoxy-D-xylulose-5-phosphate synthase, 1-deoxy-D-xylulose-5-phosphate reductoisomerase, 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, 2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase, 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase, dimethylallyl-diphosphate/isopentenyl-diphosphate:NAD(P) + oxidoreductase, isopentenyl diphosphate isomerase, and combinations thereof.
7. The non-naturally occurring microbial organism of claim 1 , further comprising one or more endogenous or exogenous genes encoding at least one enzyme of the mevalonate pathway selected from: acetyl-CoA acetyltransferase, 3-hydroxy-3-methylglutaryl-CoA synthase, 3-hydroxy-3-methylglutaryl-CoA reductase, mevalonate kinase, phosphomevalonate kinase, diphosphomevalonate decarboxylase, isopentenyl-diphosphate isomerase and combinations thereof.
8. The non-naturally occurring microbial organism of claim 1 , wherein the microbial organism is selected from bacteria, archaea, eubacteria, yeast and fungi.
9. The non-naturally occurring microbial organism of claim 1 , wherein the microbial organism is an Escherichia coli.
10. The non-naturally occurring microbial organism of claim 1 , wherein the 2-methyl-3-buten-2-ol synthase is a terpene synthase.
11. The non-naturally occurring microbial organism of claim 10 , wherein the terpene synthase is a linalool synthase.
12. The non-naturally occurring microbial organism of claim 11 , wherein the linalool synthase is derived from Clarkia breweri, Arabidopsis thaliana, Perilla setoyensis, Perilla frutescans, Actinidia arguta, Actinidia polygama, Artemesia annua, Ocimum basilicum , or Mentha aquatica.
13. The non-naturally occurring microbial organism of claim 10 , wherein the terpene synthase is a nerolidol synthase.
14. The non-naturally occurring microbial organism of claim 13 , wherein the nerolidol synthase is derived from Fragaria ananassa.
15. The non-naturally occurring microbial organism of claim 2 , wherein the at least one enzyme of the methylerythritol phosphate pathway is selected from: 1-deoxy-D-xylulose-5-phosphate synthase, 1-deoxy-D-xylulose-5-phosphate reductoisomerase, 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, 2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase, 1-hydroxy-2-methyl-2-(E)-butenyl-4-diphosphate synthase, dimethylallyl-diphosphate/isopentenyl-diphosphate:NAD(P) + oxidoreductase, isopentenyl diphosphate isomerase, and combinations thereof.
16. The non-naturally occurring microbial organism of claim 15 , wherein the at least one enzyme of the methylerythritol phosphate pathway is selected from: 1-deoxy-D-xylulose-5-phosphate synthase, 1-deoxy-D-xylulose-5-phosphate reductoisomerase and isopentenyl diphosphate isomerase.
17. The non-naturally occurring microbial organism of claim 2 , wherein the at least one enzyme of the mevalonate pathway is selected from: acetyl-CoA acetyltransferase, 3-hydroxy-3-methylglutaryl-CoA synthase, 3-hydroxy-3-methylglutaryl-CoA reductase, mevalonate kinase, phosphomevalonate kinase, diphosphomevalonate decarboxylase, isopentenyl-diphosphate isomerase and combinations thereof.
18. A non-naturally occurring microbial organism of claim 1 , wherein the dimethylallyl diphosphate available for conversion to isoprene is increased.
19. A method of producing isoprene, the method comprising the steps of culturing a non-naturally occurring microbial organism of claim 1 in a suitable culture medium containing a carbon source under conditions such that the non-naturally occurring microorganism converts at least a part of the carbon source to isoprene, and optionally recovering the isoprene.
20. The method of claim 19 , wherein at least one enzyme of a methylerythritol phosphate pathway or the mevalonate pathway is overexpressed by the organism.