IP Library Granted Patent US 9,181,558
Granted Patent B2
US 9,181,558 · App. 13/898,754 · Granted Nov 10, 2015

Production of branched-chain alcohols by photosynthetic microorganisms

Inventors: Paul Gordon Roessler (San Diego, CA); Bo Liu (San Diego, CA); Jessica Roxane Kristof (San Diego, CA)
Assignee: Synthetic Genomics, Inc.
C12N15/82C07C31/12C12N15/52C12N15/74C12P7/04C12P7/16Y02E50/10
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Quick Facts
Patent No.
US 9,181,558
App. No.
13/898,754
Granted
Nov 10, 2015
Kind
B2
Abstract

The present invention provides genes, polypeptides and expression constructs therefor, recombinant photosynthetic microorganisms, and method of use thereof, such as for the production of branched-chain alcohols (including 2-methyl-1-butanol, 3-methyl-1-butanol, and isobutanol) and derivatives thereof for a variety of uses.

Claims (28)

1. A recombinant photosynthetic microorganism comprising at least one heterologous nucleic acid sequence that encodes a branched-chain 2-ketoacid decarboxylase and at least one heterologous nucleic acid sequence that encodes an enzyme selected from the group consisting of a citramalate synthase, a 2-methylmalate dehydratase, a 3-isopropylmalate dehydratase, and a 3-isopropylmalate dehydrogenase, wherein the recombinant photosynthetic microorganism produces 2-methyl-1-butanol.

2. The recombinant photosynthetic microorganism of claim 1 , wherein the branched-chain 2-ketoacid decarboxylase is selected from the group consisting of a Saccharomyces cerevisae PDC1 gene product, a Pichia stipitis PDC1 gene product, a Saccharomyces cerevisae PDC5 gene product, a Saccharomyces cerevisae PDC6 gene product, a Saccharomyces cerevisae ARO10 gene product, a Saccharomyces cerevisae THI3 gene product, a Pichia stipitis PDC 3-6 Kivd gene product, a Pichia stipitis PDC2 gene product, a Mycobacterium tuberculosis KDC gene product, a Lactococcus lactis KDCa gene product, and a variant or homolog of any thereof.

3. The recombinant photosynthetic microorganism of claim 2 , wherein the heterologous nucleic acid sequence encodes Lactococcus lactis KDCa gene product or a variant thereof.

4. The recombinant photosynthetic microorganism of claim 3 , wherein the heterologous nucleic acid sequence encodes a Lactococcus lactis KDCa -S286Y, KDCa S286U, or F381W gene product, or a variant of any thereof.

5. The recombinant photosynthetic microorganism of claim 2 , wherein the heterologous nucleic acid sequence encodes a Pichia stipitis PDC3-6 gene product or a variant thereof.

6. The recombinant photosynthetic microorganism of claim 2 , further comprising a heterologous nucleic acid sequence encoding an alcohol dehydrogenase.

7. The recombinant photosynthetic microorganism of claim 6 , wherein alcohol dehydrogenase is a branched-chain alcohol dehydrogenase.

8. The recombinant photosynthetic microorganism of claim 7 , wherein the alcohol dehydrogenase is selected from the group consisting of a Saccharomyces cerevisae ADH1 gene product, a Saccharomyces cerevisae ADH2 gene product, a Saccharomyces cerevisae ADH3 gene product, a Saccharomyces cerevisae ADH6 gene product, a Saccharomyces cerevisae ADH7 gene product, a Saccharomyces cerevisae GRE2 gene product, a Saccharomyces cerevisae SFA1 gene product, a Saccharomyces cerevisae YPR1 gene product, a Pichia stipitis AdH3 gene product, a Pichia stipitis ADH6 gene product, a Pichia stipitis ADH7 gene product, a GRE2 gene product, a Mycobacterium tuberculosis ADH1 gene product, a Mycobacterium tuberculosis ADH gene product, a Mycobacterium tuberculosis ADHb gene product, an E. coli yqhD gene product, an Equus caballus ADHE gene product, and a variant or homolog of any thereof.

9. The recombinant photosynthetic microorganism of claim 8 , wherein the heterologous nucleic acid sequence encodes a Saccharomyces cerevisae ADH6 gene product.

10. A recombinant photosynthetic microorganism according to claim 1 , wherein the photosynthetic microorganism comprises at least one heterologous nucleic acid sequence that encodes a citramalate synthase.

11. A recombinant photosynthetic microorganism according to claim 1 , wherein the recombinant photosynthetic microorganism further comprises at least one heterologous nucleic acid sequence that encodes at least one enzyme selected from the group consisting of an acetolactate synthase, a ketol-acid reductoisomerase, and a dihydroxyacid dehydratase.

12. A recombinant photosynthetic microorganism according to claim 11 , wherein the recombinant photosynthetic microorganism comprises at least one heterologous nucleic acid sequence that encodes an acetolactate synthase.

13. A recombinant photosynthetic microorganism according to claim 1 , wherein the recombinant photosynthetic microorganism further comprises at least one heterologous nucleic acid sequence that encodes at least one enzyme selected from the group consisting of a homoserine dehydrogenase, a homoserine kinase, a threonine synthase, and a threonine ammonia-lyase.

14. A recombinant photosynthetic microorganism according to claim 13 , wherein the recombinant photosynthetic microorganism comprises at least one heterologous nucleic acid sequence that encodes a threonine ammonia-lyase.

15. The recombinant photosynthetic microorganism of claim 1 , wherein the photosynthetic microorganism is a eukaryotic microalga.

16. The recombinant photosynthetic microorganism of claim 15 , wherein the photosynthetic microorganism is selected from the group consisting of Achnanthes, Amphiprora, Amphora, Ankistrodesmus, Asteromonas, Bookelovia, Borodinella, Botryococcus, Bracteococcus, Chaetoceros, Carteria, Chlamydomonas, Chlorococcum, Chlorogonium, Chlorella, Chroomonas, Chrysosphaera, Cricosphaera, Crypthecodinium, Cryptomonas, Cyclotella, Dunaliella, Ellipsoidon, Emiliania, Eremosphaera, Ernodesmius, Euglena, Franceia, Fragilaria, Gloeothamnion, Haematococcus, Halocafeteria, Hymenomona, Isochrysis, Lepocinclis, Micractinium, Monoraphidium, Nannochloris, Nannochloropsis, Navicula, Neochloris, Nephrochloris, Nephroselmis, Nitzschia, Ochromonas, Oedogonium, Oocystis, Ostreococcus, Pavlova, Parachlorella, Pascheria, Phaeodactylum, Phagus, Platymonas, Pleurochrysis, Pleurococcus, Prototheca, Pseudochlorella, Pyramimonas, Pyrobotrys, Scenedesmus, Skeletonema, Spyrogyra, Stichococcus, Tetraselmis, Thalassiosira, Viridiella , and Volvox.

17. The recombinant photosynthetic microorganism of claim 1 , wherein the photosynthetic microorganism is a cyanobacterium.

18. The recombinant photosynthetic microorganism of claim 17 , wherein the photosynthetic microorganism is selected from the group consisting of Chamaesiphon, Chroococcus, Cyanobacterium, Cyanobium, Dactylococcopsis, Gloeobacter, Gloeocapsa, Gloeothece, Microcystis, Prochlorococcus, Prochloron, Synechococcus, Synechocystis,Chroococcidiopsis, Cyanocystis, Dermocarpella, Myxosarcina, Pleurocapsis, Stanieria, Xenococcus, Arthrospira, Borzia, Crinalium, Geitlerinema, Halospirulina, Leptolyngbya, Limnothrix, Lyngbya, Microcoleus, Oscillatoria, Planktothrix, Prochlorothrix, Pseudanabaena, Spirulina, Starria, Symploca, Trichodesmium , and Tychonema, Anabaena, Anabaenopsis, Aphanizomenon, Calothrix, Cyanospira, Cylindrospermopsis, Cylindrospermum, Nodularia, Nostoc, Chlorogloeopsis, Fischerella, Geitleria, Nostochopsis, Iyengariella, Stigonema, Rivularia, Scytonema , and Tol othri.

19. The recombinant photosynthetic microorganism of claim 18 , wherein the photosynthetic microorganism is Synechococcus or Synechocystis.

20. A method for producing 2-methyl-1-butanol, said method comprising:

(i) providing a culture medium comprising a carbon source,

(ii) culturing the recombinant photosynthetic microorganism of claim 1 in said culture medium under photoautotrophic conditions, and

(iii) recovering 2-methyl-1-butanol from said culture medium.

21. The method of claim 20 , wherein the culture medium provides inorganic carbon as substantially the sole carbon source.

22. The method of claim 21 , wherein the inorganic carbon in the culture medium is CO2.

23. The method of claim 20 , wherein the recombinant photosynthetic further comprises a heterologous nucleic acid sequence encoding an alcohol dehydrogenase.

24. The method of claim 20 , wherein the recombinant photosynthetic further comprises a heterologous nucleic acid sequence encoding encodes at least one enzyme selected from the group consisting of an acetolactate synthase, a ketol-acid reductoisomerase, and a dihydroxyacid dehydratase.

25. The method of claim 20 , wherein said at least one heterologous nucleic acid sequence further encodes one or more gene products selected from the group consisting of a homoserine dehydrogenase gene product, a homoserine kinase gene product, a threonine synthase gene product, and a threonine ammonia-lyase gene product.

Assignments (3)
CHANGE OF NAME Recorded Apr 7, 2022
From: SYNTHETIC GENOMICS, INC.
To: VIRIDOS, INC.
Reel/Frame 059631/0684 →
RELEASE OF SECURITY INTEREST Recorded Nov 10, 2020
From: OXFORD FINANCE LLC
To: SYNTHETIC GENOMICS, INC.; GENOVIA BIO, LLC; GREEN RESOURCES, LLC; SGI-DNA, INC.; SYNTHETIC GENOMICS VACCINES, INC.
Reel/Frame 054372/0822 →
SECURITY INTEREST Recorded Mar 20, 2019
From: SYNTHETIC GENOMICS, INC.
To: OXFORD FINANCE LLC
Reel/Frame 048655/0406 →
Continuity (4)
Continuation 13338579 · Dec 28, 2011
Continuation 12635653 · Dec 10, 2009
Provisional Application 61121522 · Dec 10, 2008
Related Publication 20130316415A1 · Nov 28, 2013