IP Library Patent Application 14069222
Patent Application
App. No. 14/069,222

INHIBITORS OF BRUTON'S TYROSINE KINASE

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Patent No.
US None
App. No.
14/069,222
Abstract

Described herein are irreversible kinase inhibitor compounds, methods for synthesizing such irreversible inhibitors, and methods for using such irreversible inhibitors in the treatment of diseases. Further described herein are methods, assays and systems for determining an appropriate irreversible inhibitor of a protein, including a kinase.

Claims (40)

1 .- 100 . (canceled)

101 . A method for treating mastocytosis in an individual comprising administering to the individual a compound having the structure of Formula (A1):

wherein

A is N;

R 1 is L 2 -(substituted or unsubstituted aryl), where L 2 is a bond, O, S, —S(═O), —S(═O) 2 , C(═O), -(substituted or unsubstituted C 1 -C 6 alkyl), or -(substituted or unsubstituted C 2 -C 6 alkenyl);

R 2 and R 3 are independently selected from H, lower alkyl and substituted lower alkyl;

R 4 is L 3 -X-L 4 -G, wherein,

L 3 is optional, and when present is a bond, or an optionally substituted group selected from alkyl, heteroalkyl, aryl, heteroaryl, alkylaryl, alkylheteroaryl, or alkylheterocycloalkyl;

X is optional, and when present is a bond, O, —C(═O), S, —S(═O), —S(═O) 2 , —NH, —NR 9 , —NHC(O), —C(O)NH, —NR 9 C(O), —C(O)NR 9 , —S(═O) 2 NH, —NHS(═O) 2 , —S(═O) 2 NR 9 —, —NR 9 S(═O) 2 , —OC(O)NH—, —NHC(O)O—, —OC(O)NR 9 —, —NR 9 C(O)O—, —CH═NO—, —ON═CH—, —NR 10 C(O)NR 10 —, heteroaryl, aryl, —NR 10 C(═NR 11 )NR 10 —, —NR 10 C(═NR 11 )—, —C(═NR 11 )NR 10 —, —OC(═NR 11 )—, or —C(═NR 11 )O—;

L 4 is optional, and when present is a bond, substituted or unsubstituted alkyl, substituted or unsubstituted cycloalkyl, substituted or unsubstituted alkenyl, substituted or unsubstituted alkynyl, substituted or unsubstituted aryl, substituted or unsubstituted heteroaryl, substituted or unsubstituted heterocycle;

or L 3 , X and L 4 taken together form a nitrogen containing heterocyclic ring, or an optionally substituted group selected from alkyl, heteroalkyl, aryl, heteroaryl, alkylaryl, alkylheteroaryl, or alkylheterocycloalkyl;

G is

where R a is H, substituted or unsubstituted alkyl, substituted or unsubstituted cycloalkyl; and either

R 7 and R 8 are H; and R 6 is H; or

R 7 and R 8 taken together form a bond; and R 6 is H;

each R 9 is independently selected from among H, substituted or unsubstituted lower alkyl, and substituted or unsubstituted lower cycloalkyl;

each R 10 is independently H, substituted or unsubstituted lower alkyl, or substituted or unsubstituted lower cycloalkyl; or

two R 10 groups can together form a 5-, 6-, 7-, or 8-membered heterocyclic ring; or

R 10 and R 11 can together form a 5-, 6-, 7-, or 8-membered heterocyclic ring; or

each R 11 is independently selected from H, —S(═O) 2 R 8 , —S(═O) 2 NH 2 , —C(O)R 8 , —CN, —NO 2 , heteroaryl, or heteroalkyl; or a pharmaceutically acceptable salt thereof.

102 . The method of claim 101 wherein the compound has the structure of Formula (B 1):

wherein:

each R a is independently H, -L a -(substituted or unsubstituted heteroaryl), or -L a -(substituted or unsubstituted aryl), wherein L a is a bond, O, S, —S(═O), —S(═O) 2 , NH, C(O), CH 2 , —NHC(O)O, —NHC(O), or —C(O)NH;

G is

where R a is H, substituted or unsubstituted alkyl, substituted or unsubstituted cycloalkyl; and either

R 7 and R 8 are H; and R 6 is H; or

R 7 and R 8 taken together form a bond; and R 6 is H;

Y and R 12 taken together form a 4-, 5-, or 6-membered heterocyclic ring; or

a pharmaceutically acceptable salt thereof.

103 . The method of claim 101 wherein the compound has the structure of Formula (C1):

wherein Y and R 12 taken together form a 4-, 5-, or 6-membered heterocyclic ring;

G is

where R a is H, substituted or unsubstituted alkyl, substituted or unsubstituted cycloalkyl; and either

R 7 and R 8 are H; and R 6 is H; or

R 7 and R 8 taken together form a bond; and R 6 is H; or a pharmaceutically acceptable salt thereof.

104 . The method of claim 103 wherein G is

105 . The method of claim 103 wherein R 7 and R 8 are H; and R 6 is H.

106 . A method for treating mastocytosis in an individual comprising administering to the individual a compound having the structure

or a pharmaceutically acceptable salt thereof.

107 . The method of claim 101 or 106 , wherein the compound is administered orally.

Assignments (5)
CORRECTIVE ASSIGNMENT TO CORRECT THE CONVEYING PARTY DATA PREVIOUSLY RECORDED ON REEL 036126 FRAME 0368. ASSIGNOR(S) HEREBY CONFIRMS THE MERGER AND CHANGE OF NAME. Recorded May 18, 2016
From: PHARMACYCLICS, INC.; OXFORD AMHERST LLC
To: PHARMACYCLICS LLC
Reel/Frame 038742/0371 →
CORRECTIVE ASSIGNMENT TO CORRECT THE CONVEYING PARTY DATA PREVIOUSLY RECORDED ON REEL 036126 FRAME 0359. ASSIGNOR(S) HEREBY CONFIRMS THE MERGER. Recorded May 17, 2016
From: OXFORD AMHERST CORPORATION; PHARMACYCLICS, INC.
To: PHARMACYCLICS, INC.
Reel/Frame 038742/0064 →
MERGER Recorded Jul 16, 2015
From: OXFORD AMHERST CORPORATION
To: PHARMACYCLICS, INC.
Reel/Frame 036126/0359 →
MERGER AND CHANGE OF NAME Recorded Jul 16, 2015
From: PHARMACYCLICS, INC.; OXFORD AMHERST LLC
To: PHARMACYCLICS LLC
Reel/Frame 036126/0368 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Feb 19, 2015
From: HONIGBERG, LEE; VERNER, ERIK J.; BUGGY, JOSEPH J.; LOURY, DAVID J.; CHEN, WEI
To: PHARMACYCLICS, INC.
Reel/Frame 034982/0673 →