IP Library Granted Patent US 9,132,140
Granted Patent B2
US 9,132,140 · App. 14/146,643 · Granted Sep 15, 2015

Boronic acid derivatives and therapeutic uses thereof

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Quick Facts
Patent No.
US 9,132,140
App. No.
14/146,643
Granted
Sep 15, 2015
Kind
B2
Abstract

Disclosed herein are antimicrobial compounds compositions, pharmaceutical compositions, the use and preparation thereof. Some embodiments relate to boronic acid derivatives and their use as therapeutic agents.

Claims (64)

1. A compound having the structure of Formula (I-1) or Formula (I-2):

or pharmaceutically acceptable salts thereof, wherein:

J, L, and M are each independently selected from the group consisting of CR 7 and N;

Y is selected from the group consisting of —S—, —S(O)—, —S(O) 2 —, —O—and —CH 2 —;

G is selected from the group consisting of —NR 1 R 2 , —N 3 , —C(O)NR 1 R 2 , —S(O) 2 NR 1 R 2 , —SR 3 , —OR 3 , —CH 2 NR 1 C(O)R 5 , —C(═NOR 3 )—X, —C(═NOR 3 )—Z, —C(O)OR 3 , —S(O 2 )R 3 , —C(O)NR 1 (OR 3 ), —NR 1 (OR 3 ), —NR 1 C(O)R 5 , —NR 1 C(O)NR 2 R 1a , —NR 1 C(O)OR 3 , —NR 1 S(O) 2 R 3 , —NR 1 S(O) 2 NR 2 R 1a , —NR 1 NR 2 R 1a , —C(O)NR 1 NR 2 R 1a , —S(O) 2 NR 1 NR 2 R 1a , —C(═NR 1 )R 5 , —C(═NR 1 )NR 2 R 1a , —NR 1 CR 5 (═NR 2 ), —NR 1 C(═NR 2 )NR 1a R 2a , optionally substituted —C 1-10 alkyl, optionally substituted —C 2-10 alkenyl, optionally substituted —C 2-10 alkynyl, optionally substituted —C 3-7 carbocyclyl, optionally substituted 5-10 membered heterocyclyl, optionally substituted —C 6-10 aryl, and optionally substituted 5-10 membered heteroaryl;

R 7 is present 1 to 5 times and each R 7 is independently selected from the group consisitng of —H, —OH, halogen, —CF 3 , —C 2 -C 6 alkenyl, —C 2 -C 6 alkynyl, —C 1 -C 6 heteroalkyl, —C 3 -C 7 carbocyclyl, 5-10 membered heterocyclyl, aryl, 5-10 membered heteroaryl, cyano, —C 1 -C 6 alkoxy(C 1 -C 6 )alkyl, aryloxy, sulfhydryl (mercapto), and —(CH 2 ) m —Y′—(CH 2 ) p M′;

m and p are independently 0 to 3;

Y′ is selected from the group consisting of —S—, —S(O)—, —S(O) 2 —, —O—, —CR 5 R 6 —, and —NR 1 —;

M′ is selected from the group consisting of —C(O)NR 1 R 2 ; —C(O)NR 1 OR 3 ; —NR 1 C(O)R 5 ; —NR 1 C(O)NR 2 R 1a ; —NR 1 C(O)OR 3 ; —NR 1 S(O) 2 R 3 ; —NR 1 S(O) 2 NR 2 R 1a ; —C(═NR 1 )R 5 ; —C(═NR 1 )NR 2 R 1a ; —NR 1 CR 5 (═NR 2 ); —NR 1 C(═NR 2 )NR 1a R 2a ; —C 1-4 alkyl optionally substituted with 0-2 substituents selected from the group consisting of —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 ; —C 3-10 cycloalkyl optionally substituted with 0-2 substituents selected from the group consisting of —C 1-4 alkyl, —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 ; —C 6-10 aryl optionally substituted with 0-2 substituents selected from the group consisting of —C 1-4 alkyl, —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 ; 5 to 10 membered heteroaryl optionally substituted with 0-2 substituents selected from the group consisting of —C 1-4 alkyl, —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 ; and 4 to 10 membered heterocyclyl optionally substituted with 0-2 substituents selected from the group consisting of —C 1-4 alkyl, —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 ;

X is hydrogen or optionally substituted C 1-9 alkyl;

Z is selected from the group consisting of optionally substituted C 3-8 cycloalkyl, optionally substituted heterocyclyl, optionally substituted aryl, and optionally substituted heteroaryl;

R is selected from the group consisting of —H, —C 1-9 alkyl, —CR 5 R 6 OC(O)C 1-9 alkyl, —CR 5 R 6 OC(O)OC 1-9 alkyl, and

each R 1 , R 2 , R 1a and R 2a are independently selected from the group consisting of —H, optionally substituted —C 1-10 alkyl, optionally substituted —C 2-10 alkenyl, optionally substituted —C 2-10 alkynyl, optionally substituted —C 3-7 cycloalkyl, optionally substituted 3-8 membered heterocyclyl, optionally substituted —C 6-10 aryl, and optionally substituted 5-10 membered heteroaryl;

R 3 is hydrogen, optionally substituted —C 1-10 alkyl, -optionally substituted —C 1-10 alkyl—COOH, optionally substituted —C 2-10 alkenyl, optionally substituted —C 2-10 alkynyl, optionally substituted —C 3-7 cycloalkyl, optionally substituted 3-8 membered heterocyclyl, optionally substituted —C 6-10 aryl, and optionally substituted 5-10 membered heteroaryl;

each R 5 , R 6 , R 8 and R 9 are independently selected from the group consisting of —H, —OH, -optionally substituted alkoxyl, optionally substituted —C 1-10 alkyl, optionally substituted —C 2-10 alkenyl, optionally substituted —C 2-10 alkynyl, optionally substituted —C 3-7 cycloalkyl, optionally substituted 3-8 membered heterocyclyl, optionally substituted —C 6-10 aryl, and optionally substituted 5-10 membered heteroaryl; and

each n is independently 0-3.

2. The compound of claim 1 , wherein R 8 is H and R 9 is H.

3. The compound of claim 1 , wherein:

Y is selected from the group consisting of —S—, —O—, —CH 2 —;

G is selected from the group consisting of —C(O)NR 1 R 2 ; —C(O)NR 1 OR 3 ; —NR 1 C(O)R 5 ; —NR 1 C(O)NR 2 R 1a ; —NR 1 C(O)OR 3 ; —NR 1 S(O) 2 R 3 ; —NR 1 S(O) 2 NR 2 R 1a ; —C(═NR 1 )R 5 ; —C(═NR 1 )NR 2 R 1a ; —NR 1 CR 5 (═NR 2 ); —NR 1 C(═NR 2 )NR 1a R 2a ; —C 6-10 aryl optionally substituted with 0-2 substituents selected from the group consisting of —C 1-4 alkyl, —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 ; 5-10 membered heteroaryl optionally substituted with 0-2 substituents selected from the group consisting of —C 1-4 alkyl, —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 ; and 5-10 membered heterocyclyl optionally substituted with 0-2 substituents selected from the group consisting of —C 1-4 alkyl, —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 ;

R is selected from the group consisting of —H, —C 1-9 alkyl, —CR 5 R 6 OC(O)C 1-9 alkyl, and

each R 1 , R 2 , R 1a , R 2a , R 3 , R 5 and R 6 are independently selected from —H and —C 1-4 alkyl; and

R 7 is selected from the group consisting of —H, —C 2-4 alkyl, —OH, —OC 1-4 alkyl, and halogen.

4. The compound of claim 1 , having the structure of Formula (Ia), Formula (Ib), Formula (Ic), or Formula (Id)

or pharmaceutically acceptable salts thereof.

5. The compound of claim 1 , wherein Y is —CH 2 —, —O— or —S—.

6. The compound of claim 1 , wherein:

Y is —O— or —S—;

G is selected from the group consisting of phenyl, imidazole, pyrazole, triazole, tetrazole, thiazole, thiadiazole, oxazole, oxadiazole, isoxazole, isothiazole, pyridine, pyrazine, pyrimidine, pyridazine, azetidine, and pyrazine, each optionally substituted by 0-2 substituents selected from the group consisting of C 1-4 alkyl, —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 , wherein R 1 , R 2 and R 5 in G are independently selected from —H and —C 1-4 alkyl; and

J, L and M are CR 7 .

7. The compound of claim 1 , wherein n is 0 or 1.

8. The compound of claim 1 , wherein the compound of formula (I) has the structure of formula (Ie):

or pharmaceutically acceptable salts thereof,

wherein n is 0;

R 7 is selected from t ie group consisting of H, F, Cl, —CF 3 , and —Y′—(CH 2 ) p M′; and

p is 0 or 1.

9. The compound of claim 1 , wherein G is selected from the group consisting of thiadiazole; thiadiazole optionally substituted with —NR 1 R 2 or —NR 1 C(O)R 5 ; triazole optionally substituted with —NR 1 R 2 or C 1-4 alkyl; tetrazole optionally substituted with methyl; pyridine; thiazole; phenyl; or azetidine; and wherein R 1 , R 2 and R 5 in G are independently —H or —C 1-4 alkyl.

10. The compound of claim 1 , wherein:

Y is —S—;

n is 1 or 2;

G is —C(O)NR 1 R 2 ; and

J, L and M are CR 7 .

11. The compound of claim 1 , wherein:

Y is —CH 2 —;

n is 0 to 2;

G is —C(O)NR 1 R 2 ; and

J, L and M are CR 7 .

12. The compound of claim 1 , wherein R 7 is selected from the group consisting of —H, —OH, —C 1-4 alkyl, —O—C 1-4 alkyl, —S—C 1-4 alkyl, halogen, —CF 3 , and cyano.

13. The compound of claim 1 , wherein R is —CR 5 R 6 OC(O)C 1-9 alkyl or —CR 5 R 6 OC(O)OC 1-9 alkyl.

14. The compound of claim 1 , wherein M′ is selected from the group consisting of —C(O)NR 1 R 2 ; —C(O)NR 1 OR 3 ; —NR 1 C(O)R 5 ; —NR 1 C(O)NR 2 R 1a ; —NR 1 C(O)OR 3 ; —NR 1 S(O) 2 R 3 ; —NR 1 S(O) 2 NR 2 R 1a ; —C(═NR 1 )NR 2 R 1a ; —NR 1 CR 5 (═NR 2 ); —NR 1 C(═NR 2 )NR 1a R 2a ; C 6-10 aryl optionally substituted with 0-2 substituents selected from the group consisting of —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 ; 5-10 membered heteroaryl optionally substituted with 0-2 substituents selected from the group consisting of —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 ; and 4-10 membered heterocyclyl optionally substituted with 0-2 substituents selected from the group consisting of —OR 3 , —NR 1 R 2 , halogen, —C(O)NR 1 R 2 , and —NR 1 C(O)R 5 .

15. The compound of claim 1 , wherein R 1 is H and R 2 is H.

16. The compound of claim 1 , having the structure selected from the group consisting of:

or pharmaceutically acceptable salts thereof.

17. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 1 and a pharmaceutically acceptable excipient.

18. The composition of claim 17 , wherein the pharmaceutically acceptable excipient is meglumine.

19. The pharmaceutical composition of claim 17 , further comprising an additional medicament, and wherein the additional medicament is selected from the group consisting of an antibacterial agent, an antifungal agent, an antiviral agent, an anti-inflammatory agent, and an anti-allergic agent.

20. The composition of claim 19 , wherein the additional medicament is a β-lactam antibacterial agent, and wherein the β-lactam antibacterial agent is selected from the group consisting of Ceftazidime, Biapenem, Doripenem, Ertapenem, Imipenem, Meropenem, Panipenem, Aztreonam, Tigemonam, BAL30072, SYN 2416, and Carumonam.

21. A method of treating or preventing a bacterial infection, comprising administering to a subject in need thereof, a compound according to claim 1 .

22. The method of claim 21 , further comprising administering to the subject an additional medicament, wherein the additional medicament is selected from an antibacterial agent, an antifungal agent, an antiviral agent, an anti-inflammatory agent, or an antiallergic agent.

23. The method of claim 21 , wherein the additional medicament is a β-lactam antibacterial agent, and wherein the β-lactam antibacterial agent is selected from Ceftazidime, Biapenem, Doripenem, Ertapenem, Imipenem, Meropenem, Panipenem, Aztreonam, Tigemonam, BAL30072, SYN 2416, or Carumonam.

24. A chemical complex, comprising a complex between a monosaccharide or monosaccharide derivative and a compound of claim 1 .

25. The chemical complex of claim 24 , wherein the monosaccharide derivative is meglumine.

26. A compound having the structure of:

or pharmaceutically acceptable salts thereof.

Assignments (3)
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded May 11, 2021
From: THE MEDICINES COMPANY (SAN DIEGO), LLC
To: QPEX BIOPHARMA, INC.
Reel/Frame 056205/0896 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 20, 2018
From: REMPEX PHARMACEUTICALS, INC.
To: THE MEDICINES COMPANY (SAN DIEGO), LLC
Reel/Frame 046932/0260 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jun 9, 2014
From: REDDY, RAJA K.; GLINKA, TOMASZ; TOTROV, MAXIM; HECKER, SCOTT
To: REMPEX PHARMACEUTICALS, INC.
Reel/Frame 033060/0922 →