IP Library Granted Patent US 9,522,876
Granted Patent B2
US 9,522,876 · App. 14/213,504 · Granted Dec 20, 2016

Cytotoxic and anti-mitotic compounds, and methods of using the same

Inventors: Geoffrey C. Winters (Vancouver, CA); Alexander L. Mandel (Vancouver, CA); Bradley J. Hedberg (Vancouver, CA); John Babcook (Vancouver, CA); James R. Rich (Vancouver, CA); Tom Han Hsiao Hsieh (Vancouver, CA); Elyse Marie Josée Bourque (Blaine, WA)
Assignee: ZYMEWORKS INC.
C07C311/51A61K31/445A61K38/05A61K38/06A61K39/3955A61K47/48261A61K47/48415C07C323/12C07C323/67C07C327/06C07C381/08C07D207/08C07D207/452C07D211/34C07D211/60C07D213/56C07D213/71C07D333/34C07K5/0205C07K5/06078C07C317/28C07C317/32C07C317/50C07C2101/02C07C2101/08C07C2101/14
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Quick Facts
Patent No.
US 9,522,876
App. No.
14/213,504
Granted
Dec 20, 2016
Kind
B2
Abstract

Compounds having cytotoxic and/or anti-mitotic activity are disclosed. The compounds have the following structure (I): including stereoisomers, pharmaceutically acceptable salts and prodrugs thereof, wherein R 1 , R 2 , R 3 , R 4 and R 5 are as defined herein. Methods associated with preparation and use of such compounds, as well as pharmaceutical compositions comprising such compounds, are also disclosed. Also disclosed are compositions having the structure: (T)-(L)-(D), wherein (T) is a targeting moiety, (L) is an optional linker, and (D) is a compound having structure (I).

Claims (85)

1. A compound having the following structure (I):

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof, wherein:

R 1 is selected from the group consisting of optionally substituted alkyl, optionally substituted alkylamino, optionally substituted cycloalkyl, optionally substituted aryl, optionally substituted heterocyclyl and optionally substituted heteroaryl;

R 2 is selected from the group consisting of optionally substituted alkyl, optionally substituted alkylamino, optionally substituted cycloalkyl, optionally substituted aryl, optionally substituted heterocyclyl and optionally substituted heteroaryl;

R 3 is selected from the group consisting of H and C 1-6 alkyl;

R 4 is selected from the group consisting of H and C 1-6 alkyl; and

R 5 is selected from the group consisting of C 1-6 alkyl and —SH.

2. The compound according to claim 1 , wherein each optionally substituted alkyl, optionally substituted alkylamino, optionally substituted cycloalkyl, optionally substituted aryl, optionally substituted heterocyclyl and optionally substituted heteroaryl is, independently, optionally substituted with ═O, ═S, —OH, —OR 6 , —O 2 CR 6 , —SH, —SR 6 , —SOCR 6 , —NH 2 , —N 3 , —NHR 6 , —N(R 6 ) 2 , —NHCOR 6 , —NR 6 COR 6 , —I, —Br, —Cl, —F, —CN, —CO 2 H, —CO 2 R 6 , —CHO, —COR 6 , —CONH 2 , —CONHR 6 , —CON(R 6 ) 2 , —COSH, —COSR 6 , —NO 2 , —SO 3 H, —SOR 6 or —SO 2 R 6 , wherein each R 6 is, independently, alkyl optionally substituted with halogen, —OH or —SH.

3. The compound according to claim 1 , wherein each optionally substituted aryl and optionally substituted heteroaryl is, independently, selected from the group consisting of optionally substituted phenyl, optionally substituted naphthyl, optionally substituted anthracyl, optionally substituted phenanthryl, optionally substituted furyl, optionally substituted pyrrolyl, optionally substituted thiophenyl, optionally substituted benzofuryl, optionally substituted benzothiophenyl, optionally substituted quinolinyl, optionally substituted isoquinolinyl, optionally substituted imidazolyl, optionally substituted thiazolyl, optionally substituted oxazolyl, and optionally substituted pyridinyl.

4. The compound according to claim 1 , wherein R 2 is selected from one of the following structures (III), (IV), (V), (VI):

wherein:

Q is CR 7 or N;

Z is C(R 7 ) 2 , NR 7 , S, or O;

wherein in structure (VI), one instance of Z is CR 7 or N, and the other instance is C(R 7 ) 2 , NR 7 , S, or O;

each R 7 is, independently, selected from the group consisting of H, —OH, —OR 6 , —O 2 CR 6 , —SH, —SR 6 , —SOCR 6 , —NH 2 , —N 3 , —NHR 6 , —N(R 6 ) 2 , —NHCOR 6 , —NR 6 COR 6 , —I, —Br, —Cl, —F, —CN, —CO 2 H, —CO 2 R 6 , —CHO, —COR 6 , —CONH 2 , —CONHR 6 , —CON(R 6 ) 2 , —COSH, —COSR 6 , —NO 2 , —SO 3 H, —SOR 6 or —SO 2 R 6 , wherein each R 6 is, independently, alkyl optionally substituted with halogen, —OH or —SH.

5. The compound according to claim 4 , wherein R 2 is selected from the group consisting of:

6. The compound according to claim 5 wherein R 2 is:

7. The compound according to claim 1 , wherein R 3 , R 4 and R 5 are each methyl.

8. The compound according to claim 1 , wherein R 3 is H, R 4 is methyl, and R 5 is methyl.

9. The compound according to claim 1 , which is (S,E)-N-(benzylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof.

10. The compound according to claim 1 , which is (S,E)-2,5-dimethyl-N-(4-(2,2,2-trifluoroacetamido)phenylsulfonyl)-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof.

11. The compound according to claim 1 , which is (S,E)-N-(4-aminophenylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof.

12. The compound according to claim 1 , which is (S,E)-4-((S)-2-((S)-3-(4-(aminomethyl)phenyl)-3-methyl-2-(methylamino)butanamido)-N,3,3-trimethylbutanamido)-N-(benzylsulfonyl)-2,5-dimethylhex-2-enamide, having the following structure:

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof.

13. The compound according to claim 1 , which is (S,E)-N-(3-aminophenylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof.

14. The compound according to claim 1 , which is (S,E)-N-(4-(1-aminocyclopropyl)benzylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof.

15. The compound according to claim 1 , which is (S,E)-N-(4-(1-aminocyclopropyl)phenylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof.

16. The compound according to claim 1 , which is (S,E)-N-(4-(aminomethyl)benzylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof.

17. The compound according to claim 1 , which is (S,E)-N-(4-(aminomethyl)phenylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof.

18. A method of inhibiting tumor growth in a mammal, comprising administering to a mammal in need thereof an effective amount of the compound of any one of claims 1 - 8 and 9 - 17 .

19. A pharmaceutical composition comprising the compound of any one of claims 1 - 8 and 9 - 17 , or a stereoisomer, pharmaceutically acceptable salt or prodrug thereof, and a pharmaceutically acceptable carrier, diluent or excipient.

20. A method of inhibiting tumor growth in a mammal, comprising administering to a mammal in need thereof an effective amount of the pharmaceutical composition of claim 19 .

21. A composition having the following structure:

(T)-(L)-(D)   (II)

wherein (T) is a targeting moiety, (L) is an optional linker, and (D) is a compound having the following structure (I):

or a stereoisomer, prodrug or pharmaceutically acceptable salt thereof, wherein:

R 1 is selected from the group consisting of optionally substituted alkyl, optionally substituted alkylamino, optionally substituted cycloalkyl, optionally substituted aryl, optionally substituted heterocyclyl and optionally substituted heteroaryl;

R 2 is selected from the group consisting of optionally substituted alkyl, optionally substituted alkylamino, optionally substituted cycloalkyl, optionally substituted aryl, optionally substituted heterocyclyl and optionally substituted heteroaryl;

R 3 is selected from the group consisting of H and C 1-6 alkyl;

R 4 is selected from the group consisting of H and C 1-6 alkyl; and

R 5 is selected from the group consisting of C 1-6 alkyl and —SH.

22. The composition according to claim 21 , wherein each optionally substituted alkyl, optionally substituted alkylamino, optionally substituted cycloalkyl, optionally substituted aryl, optionally substituted heterocyclyl and optionally substituted heteroaryl is, independently, optionally substituted with ═O, ═S, —OH, —OR 6 , —O 2 CR 6 , —SH, —SR 6 , —SOCR 6 , —NH 2 , —N 3 , —NHR 6 , —N(R 6 ) 2 , —NHCOR 6 , —NR 6 COR 6 , —I, —Br, —Cl, —F, —CN, —CO 2 H, —CO 2 R 6 , —CHO, —COR 6 , —CONH 2 , —CONHR 6 , —CON(R 6 ) 2 , —COSH, —COSR 6 , —NO 2 , —SO 3 H, —SOR 6 or —SO 2 R 6 , wherein each R 6 is, independently, alkyl optionally substituted with halogen, —OH or —SH.

23. The composition according to claim 21 , wherein each optionally substituted aryl and optionally substituted heteroaryl is, independently, selected from the group consisting of optionally substituted phenyl, optionally substituted naphthyl, optionally substituted anthracyl, optionally substituted phenanthryl, optionally substituted furyl, optionally substituted pyrrolyl, optionally substituted thiophenyl, optionally substituted benzofuryl, optionally substituted benzothiophenyl, optionally substituted quinolinyl, optionally substituted isoquinolinyl, optionally substituted imidazolyl, optionally substituted thiazolyl, optionally substituted oxazolyl, and optionally substituted pyridinyl.

24. The composition according to claim 21 , wherein R 2 is selected from one of the following structures (III), (IV), (V), (VI):

wherein:

Q is CR 7 or N;

Z is C(R 7 ) 2 , NR 7 , S, or O;

wherein in structure (VI), one instance of Z is CR 7 or N, and the other instance is C(R 7 ) 2 , NR 7 , S, or O;

each R 7 is, independently, selected from the group consisting of H, —OH, —OR 6 ,

—O 2 CR 6 , —SH, —SR 6 , —SOCR 6 , —NH 2 , —N 3 , —NHR 6 , —N(R 6 ) 2 , —NHCOR 6 , —NR 6 COR 6 , —I, —Br, —Cl, —F, —CN, —CO 2 H, —CO 2 R 6 , —CHO, —COR 6 , —CONH 2 , —CONHR 6 , —CON(R 6 ) 2 , —COSH,

—COSR 6 , —NO 2 , —SO 3 H, —SOR 6 or —SO 2 R 6 , wherein each R 6 is, independently, alkyl optionally substituted with halogen, —OH or —SH.

25. The composition according to claim 24 , wherein R 2 is selected from the group consisting of:

26. The composition according to claim 25 wherein R 2 is:

27. The composition according to claim 21 , wherein R 3 , R 4 and R 5 are each methyl.

28. The composition according to claim 21 , wherein R 3 is H, R 4 is methyl, and R 5 is methyl.

29. The composition according to claim 21 , wherein (D) is (S,E)-N-(benzylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

30. The composition according to claim 21 , wherein (D) is (S,E)-N-(4-aminophenylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

31. The composition according to claim 21 , wherein (D) is (S,E)-4-((S)-2-((S)-3-(4-(aminomethyl)phenyl)-3-methyl-2-(methylamino)butanamido)-N,3,3-trimethylbutanamido)-N-(benzylsulfonyl)-2,5-dimethylhex-2-enamide, having the following structure:

32. The composition according to claim 21 , wherein (D) is (S,E)-N-(3-aminophenylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

33. The composition according to claim 21 , wherein (D) is (S,E)-N-(4-(1-aminocyclopropyl)benzylsulfonyl)-2,5-dimethyl-44(S)—N,3,3-trimethyl-24(S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

34. The composition according to claim 21 , wherein (D) is (S,E)-N-(4-(1-aminocyclopropyl)phenylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

35. The composition according to claim 21 , wherein (D) is (S,E)-N-(4-(aminomethyl)benzylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

36. The composition according to claim 21 , wherein (D) is (S,E)-N-(4-(aminomethyl)phenylsulfonyl)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enamide, having the following structure:

37. The composition according to claim 21 , wherein (L-D) is MC-VC-PABC-77, having the following structure:

38. The composition according to claim 21 , wherein (L-D) is 4-((R)-2-((R)-2-(6-(2,5-dioxo-2,5-dihydro-1H-pyrrol-1-yl)hexanamido)-3-methylbutanamido)-5-ureidopentanamido)benzyl 4-(N—((S,E)-2,5-dimethyl-4-((S)—N,3,3-trimethyl-2-((S)-3-methyl-2-(methylamino)-3-phenylbutanamido)butanamido)hex-2-enoyl)sulfamoyl)benzylcarbamate (MC-VC-PABC-85), having the following structure:

39. The composition according to claim 21 , wherein (L-D) is MC-VC-PABC-41, having the following structure:

40. The composition according to claim 21 , wherein (L-D) is MC-VC-PABC-58, having the following structure:

41. The composition according to claim 21 , wherein (L-D) is MC-VC-PABC-63, having the following structure:

42. The composition according to claim 21 , wherein (T-L-D) is mAb-MC-VC-PABC-58, having the following structure:

wherein mAb is trastuzumab.

43. The composition according to claim 21 , wherein (T-L-D) is mAb-MC-VC-PABC-63, having the following structure:

wherein mAb is trastuzumab.

44. A method of killing cancer cells in a mammal, comprising administering to a mammal in need thereof an effective amount of the composition of any one of claims 21 - 43 .

45. A method of inhibiting tumor growth in a mammal, comprising administering to a mammal in need thereof an effective amount of the composition of any one of claims 21 - 43 .

46. A pharmaceutical composition, comprising the composition of any one of claims 21 - 43 , or a stereoisomer, pharmaceutically acceptable salt or prodrug thereof, and a pharmaceutically acceptable carrier, diluent or excipient.

47. A method of inhibiting tumor growth in a mammal, comprising administering to a mammal in need thereof an effective amount of the pharmaceutical composition of claim 46 .

48. A method of killing cancer cells in a mammal, comprising administering to a mammal in need thereof an effective amount of the pharmaceutical composition of claim 46 .

Assignments (12)
CHANGE OF NAME Recorded Nov 17, 2022
From: ZYMEWORKS INC.
To: ZYMEWORKS BC INC.
Reel/Frame 061817/0424 →
CHANGE OF ADDRESS Recorded Apr 21, 2022
From: ZYMEWORKS INC.
To: ZYMEWORKS INC.
Reel/Frame 059757/0253 →
RELEASE OF SECURITY INTEREST Recorded Jul 12, 2017
From: PERCEPTIVE CREDIT OPPORTUNITIES FUND, L.P.; PCOF PHOENIX II FUND, LP
To: ZYMEWORKS INC.
Reel/Frame 042982/0190 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Nov 7, 2016
From: BOURQUE, ELYSE MARIE JOSEE; RICH, JAMES R.; HSIEH, TOM HAN HSIAO
To: THE CENTRE FOR DRUG RESEARCH AND DEVELOPMENT
Reel/Frame 040245/0611 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 21, 2016
From: CDRD VENTURES INC.
To: ZYMEWORKS INC.
Reel/Frame 039821/0629 →
CORRECTIVE ASSIGNMENT TO CORRECT THE ASSIGNEE PREVIOUSLY RECORDED ON REEL 039068 FRAME 0022. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNEE: ZYMEWORKS INC.. Recorded Sep 8, 2016
From: CDRD VENTURES INC.
To: ZYMEWORKS INC.
Reel/Frame 039972/0212 →
CORRECTIVE ASSIGNMENT TO CORRECT THE APPLICATION NO. 62/051,889 NUMBER SHOULD BE 62051899 PREVIOUSLY RECORDED ON REEL 039067 FRAME 0181. ASSIGNOR(S) HEREBY CONFIRMS THE ASSIGNMENT. Recorded Jul 12, 2016
From: CENTRE FOR DRUG RESEARCH AND DEVELOPMENT
To: CDRD VENTURES INC.
Reel/Frame 039321/0382 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 1, 2016
From: CENTRE FOR DRUG RESEARCH AND DEVELOPMENT
To: CDRD VENTURES INC.
Reel/Frame 039067/0181 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 1, 2016
From: CENTRE FOR DRUG RESEARCH AND DEVELOPMENT
To: CDRD VENTURES INC.
Reel/Frame 039068/0053 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jul 1, 2016
From: CDRD VENTURES INC.
To: ZYMEWORKS BIOCHEMISTRY INC.
Reel/Frame 039068/0022 →
SECURITY AGREEMENT Recorded Jun 7, 2016
From: ZYMEWORKS INC.
To: PERCEPTIVE CREDIT OPPORTUNITIES FUND, L.P.; PCOF PHONENIX II FUND, LP
Reel/Frame 038990/0609 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Oct 14, 2014
From: WINTERS, GEOFFREY C.; MANDEL, ALEXANDER L.; HEDBERG, BRADLEY J.; BABCOOK, JOHN
To: THE CENTRE FOR DRUG RESEARCH AND DEVELOPMENT
Reel/Frame 033987/0253 →
Continuity (3)
Provisional Application 61792066 · Mar 15, 2013
Provisional Application 61792020 · Mar 15, 2013
Related Publication 20140315954A1 · Oct 23, 2014