IP Library Granted Patent US 10,106,796
Granted Patent B2
US 10,106,796 · App. 14/464,561 · Granted Oct 23, 2018

Compound and method for treating myotonic dystrophy

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Quick Facts
Patent No.
US 10,106,796
App. No.
14/464,561
Granted
Oct 23, 2018
Kind
B2
Abstract

Provided are 9-base morpholino antisense compounds targeted to polyCUG repeats in the 3′UTR region of dystrophia myotonica protein kinase (DMPK) mRNA, and related methods for treating myotonic dystrophy DM1.

Claims (46)

1. An antisense compound, comprising

an uncharged antisense oligomer of 8-30 bases comprising a sequence of at least 8 contiguous bases that is complementary to: (i) the polyCUG repeats in the 3′-UTR region of dystrophia myotonica protein kinase (DMPK) mRNA in Myotonic dystrophy type 1 (DM1) or (ii) the polyCCUG repeats in the first intron of zinc finger protein 9 (ZNF9) mRNA in Myotonic dystrophy type 2 (DM2), and

a cell-penetrating peptide (CPP) conjugated to the oligomer, wherein the CPP is of a formula selected from the group consisting of:

wherein independently for each instance R a is H or acetyl.

2. The antisense compound of claim 1 , wherein the CPP is conjugated to the antisense oligomer with a linker selected from glycine (G), cysteine (C), 6-aminohexanoic acid (Ahx), β-alanine (B), and AhxB.

3. The antisense compound of claim 2 , wherein the linker is G.

4. The antisense compound of claim 2 , wherein the CPP and linker together are of a formula selected from the group consisting of:

wherein independently for each instance R a is H or acetyl.

5. The antisense compound of claim 1 , wherein the antisense oligomer is a phosphorodiamidate morpholino oligomer (PMO) having a sequence complementary to the polyCUG repeats in the 3′-UTR region of dystrophia myotonica protein kinase (DMPK) mRNA in DM1.

6. The antisense compound of claim 5 , wherein the sequence is selected from SEQ ID NOs: 1-14.

7. The antisense compound of claim 1 , wherein the antisense oligomer is a phosphorodiamidate morpholino oligomer (PMO) having a sequence complementary to the polyCCUG repeats in the first intron of zinc finger protein 9 (ZNF9) mRNA in DM2.

8. The antisense compound of claim 7 , wherein the sequence is selected from SEQ ID NOs: 19-25.

9. An antisense compound, comprising:

an antisense oligomer of 8-30 morpholino subunits linked together by phosphorodiamidate linkages, wherein:

each morpholino subunit is of a formula:

wherein each B is a base pairing moiety independently selected from adenine, cytosine, guanine, uracil, thymine or hypoxanthine, wherein each B taken together comprises a sequence of at least 8 contiguous bases that is complementary to: (i) the polyCUG repeats in the 3′UTR region of dystrophia myotonica protein kinase (DMPK) mRNA in Myotonic dystrophy type 1 (DM1) or (ii) the polyCCUG repeats in the first intron of zinc finger protein 9 (ZNF9) mRNA in Myotonic dystrophy type 2 (DM2); and

each phosphorodiamidate linkage is of a formula:

 and

a cell-penetrating peptide (CPP) conjugated to the morpholino oligomer, wherein:

the CPP is of a formula selected from the group consisting of:

wherein independently for each instance R a is H or acetyl, and the CPP is conjugated to the morpholino oligomer by a linker selected from:

10. The antisense compound of claim 9 , wherein the CPP and linker together are of a formula selected from the group consisting of:

wherein independently for each instance R a is H or acetyl.

11. The antisense compound of claim 9 , wherein the sequence is complementary to the polyCUG repeats in the 3′UTR region of dystrophia myotonica protein kinase (DMPK) mRNA in DM1.

12. The antisense compound of claim 11 , wherein the sequence is selected from SEQ ID NOs: 1-14.

13. The antisense compound of claim 9 , wherein the sequence is complementary to the polyCCUG repeats in the first intron of zinc finger protein 9 (ZNF9) mRNA in DM2.

14. The antisense compound of claim 13 , wherein the sequence is selected from SEQ ID NOs: 19-25.

15. A method of treating myotonic dystrophy type 1 (DM1) or myotonic dystrophy type 2 (DM2) in a mammalian subject in need thereof, comprising administering to the subject an effective amount of an antisense compound, wherein the antisense compound comprises:

an antisense oligomer of 8-30 morpholino subunits linked together by phosophorodiamidate linkages, wherein:

each morpholino subunit is of a formula:

wherein each B is a base pairing moiety independently selected from adenine, cytosine, guanine, uracil, thymine or hypoxanthine, wherein each B taken together comprises a sequence of at least 8 contiguous bases that is complementary to: (i) the polyCUG repeats in the 3′UTR region of dystrophia myotonica protein kinase (DMPK) mRNA in Myotonic dystrophy type 1 (DM1) or (ii) the polyCCUG repeats in the first intron of zinc finger protein 9 (ZNF9) mRNA in Myotonic dystrophy type 2 (DM2); and

each phosphorodiamidate linkage is of a formula:

 and

a cell-penetrating peptide (CPP) conjugated to the morpholino oligomer, wherein:

the CPP is of a formula selected from the group consisting of:

wherein independently for each instance R a is H or acetyl, and the CPP is conjugated to the morpholino oligomer by a linker selected from:

16. A pharmaceutical composition, comprising:

a pharmaceutically acceptable carrier and an antisense compound, wherein the antisense compound comprises:

an antisense oligomer of 8-30 morpholino subunits linked together by phosphorodiamidate linkages, wherein:

each morpholino subunit is of a formula:

wherein each B is a base pairing moiety independently selected from adenine, cytosine, guanine, uracil, thymine or hypoxanthine, wherein each B taken together comprises a sequence of at least 8 contiguous bases that is complementary to: (i) the polyCUG repeats in the 3′UTR region of dystrophia myotonica protein kinase (DMPK) mRNA in Myotonic dystrophy type 1 (DM1) or (ii) the polyCCUG repeats in the first intron of zinc finger protein 9 (ZNF9) mRNA in Myotonic dystrophy type 2 (DM2); and

each phosphorodiamidate linkage is of a formula:

 and

a cell-penetrating peptide (CPP) conjugated to the morpholino oligomer, wherein:

the CPP is of a formula selected from the group consisting of:

wherein independently for each instance R a is H or acetyl, and the CPP is conjugated to the morpholino oligomer by a linker selected from:

Assignments (5)
SECURITY INTEREST Recorded May 7, 2025
From: SAREPTA THERAPEUTICS, INC.
To: JPMORGAN CHASE BANK, N.A. AS ADMINISTRATIVE AGENT
Reel/Frame 071218/0445 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 10, 2018
From: AVI BIOPHARMA, INC.
To: SAREPTA THERAPEUTICS, INC.
Reel/Frame 047036/0452 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Sep 10, 2018
From: HANSON, GUNNAR J.
To: SAREPTA THERAPEUTICS, INC.
Reel/Frame 046823/0683 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 28, 2018
From: AVI BIOPHARMA, INC.
To: SAREPTA THERAPEUTICS, INC.
Reel/Frame 047479/0689 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Aug 28, 2018
From: KOLE, RYSZARD
To: AVI BIOPHARMA, INC.
Reel/Frame 046724/0904 →