IP Library Granted Patent US 9,266,836
Granted Patent B2
US 9,266,836 · App. 14/561,538 · Granted Feb 23, 2016

PRMT5 inhibitors and uses thereof

Inventors: Kenneth W. Duncan (Westwood, MA); Richard Chesworth (Concord, MA); Paula Ann Boriack-Sjodin (Lexington, MA); Michael John Munchhof (Salem, CT); Lei Jin (Wellesley, MA)
Assignee: Epizyme, Inc.
C07D217/04A61K31/472A61K31/4725A61K31/497A61K31/498A61K31/502A61K31/517A61K31/538A61K31/5377C07D217/16C07D401/12C07D401/14C07D405/12C07D405/14C07D413/12C07D417/12
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Quick Facts
Patent No.
US 9,266,836
App. No.
14/561,538
Granted
Feb 23, 2016
Kind
B2
Abstract

Described herein are compounds of Formula (I), pharmaceutically acceptable salts thereof, and pharmaceutical compositions thereof. Compounds of the present invention are useful for inhibiting PRMT5 activity. Methods of using the compounds for treating PRMT5-mediated disorders are also described.

Claims (58)

1. A compound of Formula (I):

or a pharmaceutically acceptable salt thereof,

wherein:

represents a single or double bond;

R 1 is hydrogen, R z , or —C(O)R z , wherein R z is optionally substituted C 1-6 alkyl;

X is a bond, —O—, —N(R)—, —CR 4 R 5 —, —O—CR 4 R 5 , —N(R)—CR 4 R 5 —, —O—CR 4 R 5 —O—, —N(R)—CR 4 R 5 —O, —N(R)—CR 4 R 5 —N(R)—, —O—CR 4 R 5 —N(R)—, —CR 4 R 5 —O—, —CR 4 R 5 —N(R)—, —O—CR 4 R 5 —CR 6 R 7 —, —N(R)—CR 4 R 5 —CR 6 R 7 —, —CR 6 R 7 —CR 4 R 5 —O—, —CR 6 R 7 —CR 4 R 5 —N(R)—, or —CR 6 R 7 —CR 4 R 5 —;

each R is independently hydrogen or optionally substituted C 1-6 aliphatic;

R 2 and R 3 are independently selected from the group consisting of hydrogen, halo, —CN, —NO 2 , optionally substituted aliphatic, optionally substituted carbocyclyl, optionally substituted phenyl, optionally substituted heterocyclyl, optionally substituted heteroaryl, —OR A , —N(R B ) 2 , —SR A , —C(═O)R A , —C(O)OR A , —C(O)SR A , —C(O)N(R B ) 2 , —C(O)N(R B )N(R B ) 2 , —OC(O)R A , —OC(O)N(R B ) 2 , —NR B C(O)R A , —NR B C(O)N(R B ) 2 , —NR B C(O)N(R B )N(R B ) 2 , —NR B C(O)OR A , —SC(O)R A , —C(═NR B )R A , —C(═NNR B )R A , —C(═NOR A )R A , —C(═NR B )N(R B ) 2 , —NR B C(═NR B )R B , —C(═S)R A , —C(═S)N(R B ) 2 , —NR B C(═S)R A , —S(O)R A , —OS(O) 2 R A , —SO 2 R A , —NR B SO 2 R A , and —SO 2 N(R B ) 2 ; or R 2 and R 3 are taken together with their intervening atoms to form an optionally substituted carbocyclic or heterocyclic ring;

R 4 and R 5 are independently selected from the group consisting of hydrogen, halo, —CN, —NO 2 , optionally substituted aliphatic, optionally substituted carbocyclyl, optionally substituted phenyl, optionally substituted heterocyclyl, optionally substituted heteroaryl, —OR A , —N(R B ) 2 , —SR A , —C(═O)R A , —C(O)OR A , —C(O)SR A , —C(O)N(R B ) 2 , —C(O)N(R B )N(R B ) 2 , —OC(O)R A , —OC(O)N(R B ) 2 , —NR B C(O)R A , —NR B C(O)N(R B ) 2 , —NR B C(O)N(R B )N(R B ) 2 , —NR B C(O)OR A , —SC(O)R A , —C(═NR B )R A , —C(═NNR B )R A , —C(═NOR A )R A , —C(═NR B )N(R B ) 2 , —NR B C(═NR B )R B , —C(═S)R A , —C(═S)N(R B ) 2 , —NR B C(═S)R A , —S(O)R A , —OS(O) 2 R A , —SO 2 R A , —NR B SO 2 R A , and —SO 2 N(R B ) 2 ; or R 4 and R 5 are taken together with their intervening atoms to form an optionally substituted carbocyclic or heterocyclic ring;

R 6 and R 7 are independently selected from the group consisting of hydrogen, halo, —CN, —NO 2 , optionally substituted aliphatic, optionally substituted carbocyclyl, optionally substituted phenyl, optionally substituted heterocyclyl, optionally substituted heteroaryl, —OR A , —N(R B ) 2 , —SR A , —C(═O)R A , —C(O)OR A , —C(O)SR A , —C(O)N(R B ) 2 , —C(O)N(R B )N(R B ) 2 , —OC(O)R A , —OC(O)N(R B ) 2 , —NR B C(O)R A , —NR B C(O)N(R B ) 2 , —NR B C(O)N(R B )N(R B ) 2 , —NR B C(O)OR A , —SC(O)R A , —C(═NR B )R A , —C(═NNR B )R A , —C(═NOR A )R A , —C(═NR B )N(R B ) 2 , —NR B C(═NR B )R B , —C(═S)R A , —C(═S)N(R B ) 2 , —NR B C(═S)R A , —S(O)R A , —OS(O) 2 R A , —SO 2 R A , —NR B SO 2 R A , and —SO 2 N(R B ) 2 ; or R 6 and R 7 are taken together with their intervening atoms to form an optionally substituted carbocyclic or heterocyclic ring;

each R A is independently selected from the group consisting of hydrogen, optionally substituted aliphatic, optionally substituted carbocyclyl, optionally substituted heterocyclyl, optionally substituted aryl, and optionally substituted heteroaryl;

each R B is independently selected from the group consisting of hydrogen, optionally substituted aliphatic, optionally substituted carbocyclyl, optionally substituted heterocyclyl, optionally substituted aryl, and optionally substituted heteroaryl, or two R B groups are taken together with their intervening atoms to form an optionally substituted heterocyclic ring;

R 8 , R 9 , R 10 , and R 11 are independently hydrogen, halo, or optionally substituted aliphatic;

Cy is a monocyclic or bicyclic carbocyclic group or a monocyclic or bicyclic aryl group, substituted with 0, 1, 2, 3, or 4 R y groups;

each R y is independently selected from the group consisting of halo, —CN, —NO 2 , optionally substituted aliphatic, optionally substituted carbocyclyl, optionally substituted aryl, optionally substituted heterocyclyl, optionally substituted heteroaryl, —OR A , —N(R B ) 2 , —SR A , —C(═O)R A , —C(O)OR A , —C(O)SR A , —C(O)N(R B ) 2 , —C(O)N(R B )N(R B ) 2 , —OC(O)R A , —OC(O)N(R B ) 2 , —NR B C(O)R A , —NR B C(O)N(R B ) 2 , —NR B C(O)N(R B )N(R B ) 2 , —NR B C(O)OR A , —SC(O)R A , —C(═NR B )R A , —C(═NNR B )R A , —C(═NOR A )R A , —C(═NR B )N(R B ) 2 , —NR B C(═NR B )R B , —C(═S)R A , —C(═S)N(R B ) 2 , —NR B C(═S)R A , —S(O)R A , —OS(O) 2 R A , —SO 2 R A , —NR B SO 2 R A , and —SO 2 N(R B ) 2 ; or an R y group may be optionally taken together with R 2 or R 3 to form an optionally substituted 5- to 6-membered carbocyclic or heterocyclic ring fused to Cy;

each R x is independently selected from the group consisting of halo, —CN, optionally substituted aliphatic, —OR′, and —N(R″) 2 ;

R′ is hydrogen or optionally substituted aliphatic;

each R″ is independently hydrogen or optionally substituted aliphatic, or two R″ are taken together with their intervening atoms to form an optionally substituted heterocyclic ring having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur; and

n is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10, as valency permits;

wherein each instance of aliphatic is independently an alkyl, alkenyl, alkynyl, cycloalkyl, or cycloalkenyl group.

2. The compound of claim 1 , wherein the compound is of Formula (II):

or a pharmaceutically acceptable salt thereof.

3. The compound of claim 1 , wherein the compound is of Formula (III):

or a pharmaceutically acceptable salt thereof.

4. The compound of claim 1 , wherein the compound is of Formula (IV):

or a pharmaceutically acceptable salt thereof.

5. The compound of claim 1 , wherein R 1 is hydrogen.

6. The compound of claim 1 , wherein n is 0, 1, or 2.

7. The compound of claim 1 , wherein R 2 is hydrogen.

8. The compound of claim 1 , wherein R is hydrogen.

9. The compound of claim 1 , wherein Cy is phenyl substituted with 0, 1, 2, 3, or 4 R y groups.

10. The compound of claim 1 , wherein Cy is a bicyclic carbocyclic group or a bicyclic aryl group, substituted with 0, 1, 2, 3, or 4 R y groups.

11. The compound of claim 1 , wherein the compound is selected from the group consisting of:

and pharmaceutically acceptable salts thereof.

12. A pharmaceutical composition comprising a compound of claim 1 or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.

13. A method of treating a PRMT5-mediated disorder, comprising administering to a subject in need thereof a therapeutically effective amount of a compound of claim 1 or a pharmaceutically acceptable salt thereof;

wherein the PRMT5-mediated disorder is cancer, a metabolic disorder, or a hemoglobinopathy;

wherein the cancer is a hematopoietic cancer, lung cancer, prostate cancer, melanoma, or pancreatic cancer; and

wherein the metabolic disorder is diabetes or obesity.

14. The method of claim 13 , wherein the PRMT5-mediated disorder is cancer, and wherein the cancer is a hematopoietic cancer, lung cancer, prostate cancer, melanoma, or pancreatic cancer.

15. The method of claim 13 , wherein the PRMT5-mediated disorder is a metabolic disorder, and wherein the metabolic disorder is diabetes or obesity.

16. The method of claim 13 , wherein the PRMT5-mediated disorder is a hemoglobinopathy.

17. The method of claim 16 , wherein the hemoglobinopathy is sickle cell anemia or β-thalessemia.

18. The compound of claim 1 , wherein the compound is of Formula (I′-a):

or a pharmaceutically acceptable salt thereof.

19. The compound of claim 1 , wherein the compound is of Formula (I′-b):

or a pharmaceutically acceptable salt thereof.

20. The compound of claim 1 , wherein R 2 and R 3 are each hydrogen.

21. The compound of claim 1 , wherein each of R 8 , R 9 , R 10 , and R 11 are hydrogen.

22. The compound of claim 1 , wherein Cy is selected from the group consisting of:

23. The compound of claim 1 , wherein the compound is selected from the group consisting of:

and pharmaceutically acceptable salts thereof.

24. The compound of claim 1 , wherein Cy is selected from the group consisting of:

25. The compound of claim 1 , wherein the compound is selected from the group consisting of:

and pharmaceutically acceptable salts thereof.

26. A pharmaceutical composition comprising a compound of claim 11 or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.

27. A pharmaceutical composition comprising a compound of claim 23 or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.

28. A pharmaceutical composition comprising a compound of claim 25 or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.

Assignments (4)
TERMINATION AND RELEASE OF SECURITY INTEREST IN PATENTS AT REEL/FRAME: 051057/0848 Recorded Aug 13, 2022
From: BIOPHARMA CREDIT PLC
To: EPIZYME, INC.
Reel/Frame 061165/0501 →
SECURITY INTEREST Recorded Nov 19, 2019
From: EPIZYME, INC.
To: BIOPHARMA CREDIT PLC
Reel/Frame 051057/0848 →
CORRECTIVE ASSIGNMENT TO CORRECT THE ATTORNEY DOCKET NUMBER PREVIOUSLY RECORDED ON REEL 034795 FRAME 0269. ASSIGNOR(S) HEREBY CONFIRMS THE ATTORNEY DOCKET NUMBER SHOULD BE: E0501.70003US03. Recorded Jan 30, 2015
From: DUNCAN, KENNETH W.; CHESWORTH, RICHARD; BORIACK-SJODIN, PAULA ANN; MUNCHHOF, MICHAEL JOHN; JIN, LEI
To: EPIZYME, INC.
Reel/Frame 034861/0669 →
ASSIGNMENT OF ASSIGNOR'S INTEREST Recorded Jan 23, 2015
From: DUNCAN, KENNETH W.; CHESWORTH, RICHARD; BORIACK-SJODIN, PAULA ANN; MUNCHHOF, MICHAEL JOHN; JIN, LEI
To: EPIZYME, INC.
Reel/Frame 034795/0269 →
Continuity (4)
Continuation 14136738 · Dec 20, 2013
Provisional Application 61790928 · Mar 15, 2013
Provisional Application 61745490 · Dec 21, 2012
Related Publication 20150191432A1 · Jul 9, 2015