Segmented micro RNA mimetics
View Patent ↗This invention relates generally to segmented oligonucleotides capable of modulating gene expression. Specifically, the instant invention relates to segmented microRNA (miRNA) oligonucleotides, including segmented miRNA precursors and segmented pre-microRNAs. The invention also relates to compositions comprising such segmented oligonucleotides, as well as to methods of making and using such oligonucleotides for diagnosis and treatment of diseases associated or causally linked to aberrant levels or activities of gene expression, including aberrant levels of coding and/or non-coding RNA.
1. A double-stranded segmented miRNA mimetic molecule represented by Formula IV:
wherein
(a) the molecule comprises a passenger strand and a guide strand where each line and its adjacent “N” represent a contiguous stretch of nucleotides, each of “X1,” “X2,” “X3” and “X4” represents the number of nucleotides in each stretch, “G/N” represents a discontinuity in the guide strand, “P/N” represents a discontinuity in the passenger strand, “Y1” represents a number of nucleotide positions in the passenger strand discontinuity, “Y2” represents a number of nucleotide positions in the guide strand discontinuity, and each group of dashed lines “-----” and its adjacent “(W)” represents a terminal overhang that is optionally present, and each of “Z1” and “Z2” represents the number of overhanging nucleotides;
(b) X1 and X2 are independently integers from 2 to 24, Y1 is an integer from 0 to 6, provided that the sum of X1, X2 and Y1 is an integer from 16 to 26, X3 is an integer from 2 to 20, X4 is an integer from 6 to 24, Y2 is an integer from 0 to 6, provided that the sum of X3, X4 and Y2 is an integer from 16 to 26; Z1 and Z2 are independently integers from 0 to 4;
(c) N X4 comprises sequence having at least 6 contiguous nucleotides of the seed sequence of a miRNA sequence having any of SEQ ID NOs: 1-1090;
(d) N X3 and N X4 together comprise sequence having at least 50% homology to the miRNA sequence; and
(e) N X1 and N X2 together comprise sequence having at least 50% complementarity to the miRNA sequence,
wherein each of G/N and P/N independently comprises a nick, gap, non-nucleotide substitution, or non-nucleotide insertion.
2. The miRNA mimetic molecule of claim 1 , wherein G/N comprises a nick or gap in the guide strand.
3. The miRNA mimetic molecule of claim 1 , wherein P/N comprises a nick or gap in the passenger strand.
4. The miRNA mimetic molecule of claim 1 , wherein G/N and P/N are the same.
5. The miRNA mimetic molecule of claim 1 , wherein G/N and P/N are different.
6. The miRNA mimetic molecule of claim 1 , wherein N X4 comprises sequence having at least 7 contiguous nucleotides of the seed sequence of the miRNA.
7. The miRNA mimetic molecule of claim 1 , wherein N X4 comprises sequence having at least 8 contiguous nucleotides of the seed sequence of the miRNA.
8. The miRNA mimetic molecule of claim 1 , wherein N X3 and N X4 together comprise sequence having at least 60, 70, 80, or 90% homology to the miRNA sequence.
9. The miRNA mimetic molecule of claim 1 , wherein N X1 and N x2 together comprise sequence having at least 60, 70, 80, or 90% complementarity to the miRNA sequence.
10. A composition comprising the miRNA mimetic molecule of claim 1 and a pharmaceutically acceptable carrier, diluent, excipient, adjuvant, emulsifier, buffer, stabilizer, or preservative.
11. The miRNA mimetic molecule of claim 1 , wherein the molecule comprises one or more 2′-deoxy modified nucleotides, 2′-O-methyl modified nucleotides, 2′-deoxy-2′-fluoro modified nucleotides or universal base modified nucleotides, or a combination thereof.
12. The miRNA mimetic molecule of claim 1 , wherein the molecule comprises one or more phosphorothioate internucleotide linkages.
13. The miRNA mimetic molecule of claim 1 , wherein the molecule comprises one or more of a ribonucleotide or a deoxyribonucleotide, or a combination thereof, that is chemically-modified at a nucleic acid sugar, base, or backbone.
14. The miRNA mimetic molecule of claim 1 , wherein the molecule comprises one or more locked nucleic acid (LNA) nucleotides.
15. The miRNA mimetic molecule of claim 1 , wherein the molecule comprises a ligand.
16. The miRNA mimetic molecule of claim 15 , wherein the ligand is a galactose, a galactosamine, a folate, or a cholesterol.
17. The miRNA mimetic molecule of claim 1 , wherein Z1 and Z2 are independently 1, 2, or 3.
18. The miRNA mimetic molecule of claim 1 , wherein G/N comprises a non-nucleotide substitution or non-nucleotide insertion in the guide strand.
19. The miRNA mimetic molecule of claim 1 , wherein P/N comprises a non-nucleotide substitution or non-nucleotide insertion in the passenger stand.