Methods of synthesizing substituted purine compounds
View Patent ↗The present invention provides an efficient process for the synthesis of (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-((((1r,3S)-3-(2-(5-(tert-butyl)-1H-benzo[d]imidazol-2-yl)ethyl)cyclobutyl)(isopropyl)amino)methyl)tetrahydrofuran-3,4-diol and hydrates thereof and methods for treating disorders in which DOT1-mediated protein methylation plays a part, such as cancer and neurological disorders, by administering these compounds and pharmaceutical compositions to subjects in need thereof. The present invention also provides novel crystalline forms of (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-((((1r,3S)-3-(2-(5-(tert-butyl)-1H-benzo[d]imidazol-2-yl)ethyl)cyclobutyl)(isopropyl)amino)methyl)tetrahydrofuran-3,4-diol and hydrates thereof (Form A, Form B, and Form C), characterized by a unique X-ray diffraction pattern and Differential Scanning Calorimetry profile, as well as a unique crystalline structure.
1. A method for preparing high purity (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(((3-(2-(5-(tert-butyl)-1H-benzo[d]imidazol-2-yl)ethyl)cyclobutyl)(isopropyl)amino)methyl)tetrahydrofuran-3,4-diol by recrystallization, comprising:
dissolving a mixture of cis and trans isomers of (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(((3-(2-(5-(tert-butyl)-1H-benzo[d]imidazol-2-yl)ethyl)cyclobutyl)(isopropyl)amino)methyl)tetrahydrofuran-3,4-diol in a first solution comprising acetonitrile and water to form a second solution;
seeding the second solution with a seed crystal of (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(((3-(2-(5-(tert-butyl)-1H-benzo[d]imidazol-2-yl)ethyl)cyclobutyl)(isopropyl)amino)methyl)tetrahydrofuran-3,4-diol to generate a slurry of precipitate;
collecting the precipitate by filtration to yield the high purity (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(((3-(2-(5-(tert-butyl)-1H-benzo[d]imidazol-2-yl)ethyl)cyclobutyl)(isopropyl)amino)methyl)tetrahydrofuran-3,4-diol, wherein the high purity (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(((3-(2-(5-(tert-butyl)-1H-benzo[d]imidazol-2-yl)ethyl)cyclobutyl)(isopropyl)amino)methyl)tetrahydrofuran-3,4-diol contains less than 2% of the trans isomer.
2. The method of claim 1 , wherein the seed crystal has an area percentage purity by HPLC of greater than 99.5%.
3. The method of claim 1 , wherein the first solution has a ratio of acetonitrile to water of about 3:1.
4. The method of claim 1 , wherein the second solution is maintained at about 30° C. prior to seeding the second solution with the seed crystal.
5. The method of claim 1 , wherein the slurry is heated and cooled.
6. The method of claim 5 , wherein the slurry is heated to about 75° C.
7. The method of claim 6 , wherein the slurry is maintained at about 75° C. for about 1 to 2 hours.
8. The method of claim 5 , wherein the slurry is cooled to about 30° C.
9. The method of claim 8 , wherein the slurry is cooled slowly to about 30° C.
10. The method of claim 8 , wherein the cooled slurry is maintained at about 30° C. for about 12 to 16 hours.
11. The method of claim 1 , wherein the method comprises a first recrystallization and a second recrystallization.
12. The method of claim 1 , wherein the high purity (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(((3-(2-(5-(tert-butyl)-1H-benzo[d]imidazol-2-yl)ethyl)cyclobutyl)(isopropyl)amino)methyl)tetrahydrofuran-3,4-diol has a purity of greater than 99%.
13. The method of claim 1 , wherein the high purity (2R,3R,4S,5R)-2-(6-amino-9H-purin-9-yl)-5-(((3-(2-(5-(tert-butyl)-1H-benzo[d]imidazol-2-yl)ethyl)cyclobutyl)(isopropyl)amino)methyl)tetrahydrofuran-3,4-diol contains less than 1% of the trans isomer.
14. The method of claim 1 , wherein the precipitate is washed with a third solution comprising an organic solvent and water.
15. The method of claim 14 , wherein the organic solvent in the third solution is acetonitrile.