Multi-parameter diabetes risk evaluations

1. A method of evaluating a subject's risk of developing type 2 diabetes and/or of having prediabetes, comprising:

providing at least one in vitro biosample from a subject;

performing Nuclear Magnetic Resonance on at least one in vitro biosample obtaining at least one NMR spectrum of the biosample;

programmatically calculating, using at least one processor, a diabetes risk index score of a subject using at least one defined mathematical model of risk of developing type 2 diabetes that includes at least one lipoprotein component, at least one branched chain amino acid, and inflammatory biomarker GlycA obtained from the at least one in vitro biosample,

wherein the diabetes risk index score has a defined numerical range.

2. The method of claim 1 , further comprising programmatically defining at least two different mathematical models of risk of developing type 2 diabetes, the at least two different mathematical models including one for subjects on a statin therapy that includes lipoprotein component that are statin insensitive and one for subjects not on a statin therapy.

3. The method of claim 1 , further comprising programmatically defining at least two different mathematical models of risk of developing type 2 diabetes, the at least two different mathematical models with different lipoprotein components including one for fasting biosamples, and one for non-fasting biosamples.

4. The method of claim 1 , wherein the at least one defined mathematical model of risk includes NMR derived measurements of a plurality of selected lipoprotein components of the at least one biosample of the subject, and NMR measurements of GlycA.

5. The method of claim 1 , wherein the defined mathematical risk model includes only NMR derived measurements of a subject's in vitro blood plasma or serum biosample.

6. The method of claim 1 , further comprising, before the programmatic calculation,

placing a blood plasma or serum sample of the subject in an NMR spectrometer;

deconvolving the obtained at least one NMR spectrum; and

calculating NMR derived measurements of GlycA and a plurality of selected lipoprotein parameters based on the deconvolved at least one NMR spectrum.

7. The method of claim 6 , wherein the calculating step is carried out to also calculate a measurement of branched chain amino acid valine.

8. The method of claim 1 , further comprising measuring the fasting blood plasma or serum glucose value of the subject.

9. The method of claim 8 , wherein the method further comprises programmatically generating a report that identifies a respective subject as at risk of developing prediabetes if a fasting blood plasma or serum glucose value is between about 90-99 mg/dl and the diabetes risk index is in a fourth quartile or fifth quintile of a population norm.

10. The method of claim 8 , wherein the diabetes risk index score has a defined numerical range, and wherein the method further comprises programmatically generating a report that identifies a respective subject as at risk of developing prediabetes if a fasting blood plasma or serum glucose value is between about 90-125 mg/dl and the diabetes risk index is in a fourth quartile or fifth quintile of a population norm.

11. The method of claim 1 , wherein the defined at least one mathematical model includes NMR measurements of GlycA and a plurality of selected lipoprotein components using lipoprotein subclasses, sizes and concentrations measured from an in vitro blood plasma or serum biosample.

12. The method of claim 1 , wherein the at least one defined mathematical model includes selected lipoprotein components comprising at least two of the following: large VLDL subclass particle number, medium VLDL subclass particle number, total HDL subclass particle number, medium HDL subclass particle number and VLDL particle size.

13. The method of claim 12 , wherein the selected lipoprotein components include all of the listed lipoprotein components.

14. The method of claim 1 , wherein the at least one defined mathematical model includes a ratio of medium HDL-P to total HDL-P.

15. The method of claim 1 , wherein the at least one defined mathematical model includes VLDL subclass particle size (vsz3), a ratio of medium HDL-P to total HDL-P (HMP_HDLP) multiplied by GlycA and a ratio of VLDL size by a sum of large VLDL-P and medium VLDL-P.

16. The method of claim 1 , further comprising, before the programmatic calculation:

electronically obtaining a composite NMR spectrum of a GlycA fitting region of the biosample of the subject, wherein the GlycA fitting region extends from 1.845 ppm to 2.080 ppm, and wherein the GlycA peak region is centered at 2.00 ppm;

electronically deconvolving the composite NMR spectrum using a defined deconvolution model with high density lipoprotein (HDL) components, low density lipoprotein (LDL) components, VLDL (very low density lipoprotein)/chylomicron components, and curve fit functions associated with at least a GlycA peak region; and

programmatically generating a measure of GlycA using the curve fit functions.

17. The method of claim 16 , further comprising applying a conversion factor to the measure of GlycA to provide the measure in μmol/L.

18. The method of claim 16 , wherein the curve fit functions are overlapping curve fit functions, and wherein the measure of GlycA is generated by summing a defined number of curve fit functions, and wherein the deconvolution model further comprises a protein signal component for protein having a density greater than 1.21 g/L.

19. A computer program product for evaluating in vitro patient biosamples, the computer program product comprising:

a non-transitory computer readable storage medium having computer readable program code embodied in the medium, the computer-readable program code comprising:

computer readable program code that obtains concentration measurements from a NMR spectrometer and provides at least one mathematical model of risk to progression to type 2 diabetes over a defined time period of between 1-7 years, wherein the at least one mathematical model of risk to progression to type 2 diabetes includes a plurality of components, including at least one lipoprotein component inflammatory marker GlycA, and at least one branched chain amino acid; and

computer readable program code that calculates a diabetes risk index associated with a patient's biosample based on the at least one mathematical model of a risk of developing type 2 diabetes.

20. A method of monitoring a patient to evaluate a therapy or determine whether the patient is at-risk of developing type 2 diabetes or has prediabetes, comprising:

performing Nuclear Magnetic Resonance on a biosample obtaining at least one NMR spectrum of the biosample;

programmatically providing at least one defined mathematical model of risk of progression to type 2 diabetes that includes a plurality of components including NMR derived measurements of selected lipoprotein subclasses, valine, and GlycA;

programmatically deconvolving at least one NMR spectrum of respective in vitro patient blood plasma or serum samples and determining measurements of lipoprotein subclasses, GlycA and valine;

using at least one processor to programmatically calculate a diabetes risk index score of the respective patients using the at least one defined model and corresponding patient sample measurements; and

evaluating at least one of (i) whether the diabetes risk index is above a defined level of a population norm associated with increased risk of developing type 2 diabetes; and/or (ii) whether the diabetes risk index is increasing or decreasing over time in response to a therapy.