Genetic markers associated with drought tolerance in maize

1. A method of identifying and/or selecting a maize plant or maize plant part having increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance, said method comprising:

(a) detecting, in a maize plant or plant part, an allele of at least one marker locus that is associated with increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance in a plant, wherein said at least one marker locus is located within a chromosomal interval on chromosome 5 of the Maize B73 genome version 3 defined by and including base pair (bp) position 164893210 to base pair (bp) position 164900398 (SEQ ID NO: 23), wherein the chromosome interval comprises a haplotype selected from the group consisting of at least one of a C allele corresponding to position 164895193, a G allele corresponding to position 164896921, a G allele corresponding to position 164897496, a G allele corresponding to position 164897515, and a C allele corresponding to position 164897518,

(b) selecting a maize plant or maize part on the basis of the presence of the at least one allele of a marker locus in (a);

(c) crossing the plant of (b) with a maize plant not comprising said at least one allele of marker locus; and

(d) growing progeny from the cross of (c), wherein the progeny comprises the at least one allele of the marker locus,

thereby identifying and/or selecting a maize plant or plant part having increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance.

2. The method of claim 1 , wherein the plant part in which said at least one marker locus located within said chromosomal interval is detected is regenerated to produce a plant having increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance.

3. The method of claim 1 wherein a combination of two or more markers associated with increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance in a maize plant are detected.

4. A method of producing a maize plant having increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance, comprising:

crossing a first maize plant or maize germplasm with a second maize plant or maize germplasm, wherein said first maize plant or maize germplasm comprises within its genome a marker associated with increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance in a maize plant, wherein said marker is located within a chromosomal interval on chromosome 5 of the Maize B73 genome version 3 defined by and including base pair (bp) position 164893210 to base pair (bp) position 164900398 (SEQ ID NO: 23), wherein the chromosome interval comprises a haplotype selected from the group consisting of at least one of a C allele corresponding to position 164895193, a G allele corresponding to position 164896921, a G allele corresponding to position 164897496, a G allele corresponding to position 164897515, and a C allele corresponding to position 164897518, wherein the marker has been detected in an isolated nucleic acid; and

growing progeny from the cross, wherein the progeny comprises the marker;

thereby producing a plant having increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance.

5. The method of claim 4 wherein a combination of two or more markers associated with increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance in a maize plant are detected.

6. A method for producing a hybrid maize plant having increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance, said method comprising:

identifying a first maize plant comprising a chromosome interval on chromosome 5 defined by and including base pair (bp) position 164893210 to base pair (bp) position 164900398 (SEQ ID NO: 23), wherein the chromosome interval comprises a haplotype selected from the group consisting of at least one of a C allele corresponding to position 164895193, a G allele corresponding to position 164896921, a G allele corresponding to position 164897496, a G allele corresponding to position 164897515, and a C allele corresponding to position 164897518;

crossing the first maize plant and a second maize plant not comprising said haplotype to produce an F1 generation; and

selecting one or more members of the F1 generation that comprises said haplotype, whereby a hybrid maize plant having increased yield under non-drought conditions, increased yield stability under drought conditions, and/or increased drought tolerance is produced.

7. The method of claim 1 , wherein the chromosome interval comprises a haplotype comprising a G allele corresponding to position 164897496 and at least one additional allele selected from the group consisting of a C allele corresponding to position 164895193, a G allele corresponding to position 164896921, a G allele corresponding to position 164897515, and a C allele corresponding to position 164897518.

8. The method of claim 4 , wherein the chromosome interval comprises a haplotype comprising a G allele corresponding to position 164897496 and at least one additional allele selected from the group consisting of a C allele corresponding to position 164895193, a G allele corresponding to position 164896921, a G allele corresponding to position 164897515, and a C allele corresponding to position 164897518.